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Aaron Hess
mrsi_recon
Commits
17880bb3
Commit
17880bb3
authored
Nov 17, 2021
by
card0206@ox.ac.uk
Browse files
Added wrapper methods for water and meabolite
parent
b4f3df96
Changes
1
Hide whitespace changes
Inline
Side-by-side
concept.py
View file @
17880bb3
...
@@ -513,3 +513,23 @@ def reconAlpha171(fname_in,fname_out='',**kwargs):
...
@@ -513,3 +513,23 @@ def reconAlpha171(fname_in,fname_out='',**kwargs):
my_recon
.
saveIma2Nii
(
fname_out
)
my_recon
.
saveIma2Nii
(
fname_out
)
return
my_recon
return
my_recon
def
recon_water
(
fname_in
,
fname_out
=
''
,
sens_maps
=
''
,
**
kwargs
):
my_recon
=
Recon
(
fname_in
,
**
kwargs
)
my_recon
.
getKdata
()
my_recon
.
arrangeData
()
my_recon
.
calcImg
()
my_recon
.
combineCoils
()
my_recon
.
saveSensMaps
(
sens_maps
)
my_recon
.
saveIma2Nii
(
fname_out
)
return
my_recon
def
recon_metab
(
fname_in
,
sens_maps
,
fname_out
=
''
,
**
kwargs
):
my_recon
=
Recon
(
fname_in
,
**
kwargs
)
my_recon
.
getKdata
()
my_recon
.
arrangeData
()
my_recon
.
calcImg
()
my_recon
.
loadSensMaps
(
sens_maps
)
my_recon
.
combineCoils
()
my_recon
.
saveIma2Nii
(
fname_out
)
return
my_recon
\ No newline at end of file
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