Commit 6d7638e7 authored by Alberto Lazari's avatar Alberto Lazari
Browse files

test

parent 8cc879cc
......@@ -17,12 +17,17 @@ STEP 4. Run wrapper to copy files and convert to mnc (copying ODI and fintra/NDI
STEP 6. Offline QC and import to Graham for registration of average b0s
# QSN
# QSM
# Notes: no b0 needed?
# 2 scans with 20 echoes each
# Notes: b0 needed to register the QSM echoes to it
# It's fine for the 2 scans to be shifted from each other, the pipeline contains a registration step
# Select a good echo that you can use with MBM first
STEP 1. Run registration with MBM on one of the echoes, so you can get a good brain mask. Use the same initial model as for the diffusion data.
STEP 1. Run registration with MBM on one of the echoes, so you can get a good brain mask for each subject's native space. Use the same initial model as for the diffusion data.
# Picking a good input for MBM: try average of first 4 echoes, but sometimes that doesn't work well. Then try either the second echo (high SNR and no bubble distortion, but low contrast), or 4th/5th echo (high contrast but low SNR and more distortion from bubbles)
# Also, sometimes the voted/segmentation file from the nlin (i.e. study template) has better segmentation, so you can backproject that to native space.
STEP 2. Convert mask to nifti and expand it.
......
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Terminating program
EddyInputError: Error when attempting to read --index file /vols/Scratch/myelin/Mohamed/Merima_data_secondbatch_preprocessed/20210301_160217_MS74_MS74_MCAO_T2w_Diffusion_QSM_round2_1_3/index.txt
Terminating program
Terminating program
SSD = 5.00013 n = 320160 Reg = 0 Cost = 5.00013
SSD = 4.38527 n = 320160 Reg = 0.000320505 Cost = 4.38559
SSD = 4.37279 n = 320160 Reg = 0.000906261 Cost = 4.3737
SSD = 4.3727 n = 320160 Reg = 0.000991711 Cost = 4.37369
SSD = 4.37269 n = 320160 Reg = 0.000990383 Cost = 4.37368
SSD = 4.37269 n = 320160 Reg = 0.000991886 Cost = 4.37368
SSD = 4.37269 n = 320160 Reg = 0.000991885 Cost = 4.37368
***Going to next resolution level***
SSD = 7.78047 n = 320160 Reg = 0.000459828 Cost = 7.78093
SSD = 7.77472 n = 320160 Reg = 0.00221155 Cost = 7.77694
SSD = 7.77371 n = 320160 Reg = 0.00298184 Cost = 7.77669
SSD = 7.77359 n = 320160 Reg = 0.00309481 Cost = 7.77669
SSD = 7.77359 n = 320160 Reg = 0.0031004 Cost = 7.77669
SSD = 7.77359 n = 320160 Reg = 0.0031004 Cost = 7.77669
SSD = 7.77358 n = 320160 Reg = 0.00309934 Cost = 7.77668
SSD = 7.77361 n = 320160 Reg = 0.00309341 Cost = 7.7767
SSD = 7.7736 n = 320160 Reg = 0.00309401 Cost = 7.77669
SSD = 7.77361 n = 320160 Reg = 0.00309696 Cost = 7.7767
SSD = 7.77358 n = 320160 Reg = 0.00309939 Cost = 7.77668
***Going to next resolution level***
SSD = 17.0973 n = 320160 Reg = 0.00083371 Cost = 17.0981
SSD = 17.0534 n = 320160 Reg = 0.0136694 Cost = 17.0671
SSD = 17.0463 n = 320160 Reg = 0.0188744 Cost = 17.0652
SSD = 17.0454 n = 320160 Reg = 0.0196876 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197106 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197099 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197034 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197033 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197032 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197042 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
SSD = 17.0454 n = 320160 Reg = 0.0197045 Cost = 17.0651
***Going to next resolution level***
SSD = 29.4439 n = 320160 Reg = 0.00633155 Cost = 29.4502
SSD = 29.3183 n = 320160 Reg = 0.062302 Cost = 29.3806
SSD = 29.2891 n = 320160 Reg = 0.0844086 Cost = 29.3735
SSD = 29.2857 n = 320160 Reg = 0.0874256 Cost = 29.3731
SSD = 29.2856 n = 320160 Reg = 0.0875322 Cost = 29.3731
SSD = 29.2856 n = 320160 Reg = 0.0875288 Cost = 29.3731
SSD = 29.2856 n = 320160 Reg = 0.0875041 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874517 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874319 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.087427 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874258 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874258 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
SSD = 29.2857 n = 320160 Reg = 0.0874259 Cost = 29.3731
***Going to next resolution level***
SSD = 29.2878 n = 320160 Reg = 0.0356832 Cost = 29.3235
SSD = 29.0634 n = 320160 Reg = 0.16058 Cost = 29.224
SSD = 29.0117 n = 320160 Reg = 0.205349 Cost = 29.2171
SSD = 29.0076 n = 320160 Reg = 0.209321 Cost = 29.217
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
SSD = 29.0076 n = 320160 Reg = 0.209397 Cost = 29.217
SSD = 29.0076 n = 320160 Reg = 0.209397 Cost = 29.217
SSD = 29.0076 n = 320160 Reg = 0.209398 Cost = 29.217
SSD = 29.0075 n = 320160 Reg = 0.209405 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209432 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209458 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
SSD = 29.0075 n = 320160 Reg = 0.209462 Cost = 29.2169
***Going to next resolution level***
SSD = 65.7659 n = 2651539 Reg = 0.507738 Cost = 66.2736
SSD = 65.7467 n = 2651539 Reg = 0.42811 Cost = 66.1748
SSD = 65.7684 n = 2651539 Reg = 0.373991 Cost = 66.1424
SSD = 65.7674 n = 2651539 Reg = 0.360552 Cost = 66.128
SSD = 65.7902 n = 2651539 Reg = 0.323278 Cost = 66.1135
SSD = 65.7994 n = 2651539 Reg = 0.30817 Cost = 66.1075
SSD = 65.814 n = 2651539 Reg = 0.287718 Cost = 66.1017
SSD = 65.8253 n = 2651539 Reg = 0.272618 Cost = 66.0979
SSD = 65.8311 n = 2651539 Reg = 0.26349 Cost = 66.0946
SSD = 65.837 n = 2651539 Reg = 0.254902 Cost = 66.0919
SSD = 65.8403 n = 2651539 Reg = 0.249266 Cost = 66.0896
***Going to next resolution level***
SSD = 220.03 n = 2651539 Reg = 0.110845 Cost = 220.141
SSD = 219.544 n = 2651539 Reg = 0.295643 Cost = 219.839
SSD = 219.181 n = 2651539 Reg = 0.455376 Cost = 219.637
SSD = 218.893 n = 2651539 Reg = 0.646948 Cost = 219.54
SSD = 218.608 n = 2651539 Reg = 0.764834 Cost = 219.373
SSD = 218.37 n = 2651539 Reg = 0.925908 Cost = 219.296
SSD = 218.063 n = 2651539 Reg = 1.11977 Cost = 219.183
SSD = 217.96 n = 2651539 Reg = 1.16777 Cost = 219.127
SSD = 217.801 n = 2651539 Reg = 1.26473 Cost = 219.066
SSD = 217.692 n = 2651539 Reg = 1.34076 Cost = 219.032
SSD = 217.628 n = 2651539 Reg = 1.37632 Cost = 219.004
***Going to next resolution level***
SSD = 318.967 n = 2651539 Reg = 0.0201721 Cost = 318.988
SSD = 317.263 n = 2651539 Reg = 0.0600366 Cost = 317.323
SSD = 314.568 n = 2651539 Reg = 0.214213 Cost = 314.782
SSD = 310.856 n = 2651539 Reg = 0.657496 Cost = 311.514
SSD = 306.478 n = 2651539 Reg = 1.62697 Cost = 308.105
SSD = 302.091 n = 2651539 Reg = 3.19579 Cost = 305.286
SSD = 298.491 n = 2651539 Reg = 4.95475 Cost = 303.446
SSD = 297.722 n = 2651539 Reg = 5.38418 Cost = 303.106
SSD = 295.388 n = 2651539 Reg = 6.82496 Cost = 302.213
SSD = 294.611 n = 2651539 Reg = 7.33523 Cost = 301.946
SSD = 293.97 n = 2651539 Reg = 7.71159 Cost = 301.682
SSD = 293.724 n = 2651539 Reg = 7.81014 Cost = 301.534
SSD = 293.681 n = 2651539 Reg = 7.76106 Cost = 301.442
SSD = 293.69 n = 2651539 Reg = 7.6833 Cost = 301.373
SSD = 293.751 n = 2651539 Reg = 7.57415 Cost = 301.326
SSD = 293.822 n = 2651539 Reg = 7.45748 Cost = 301.28
SSD = 293.823 n = 2651539 Reg = 7.41973 Cost = 301.243
SSD = 293.769 n = 2651539 Reg = 7.43884 Cost = 301.208
SSD = 293.707 n = 2651539 Reg = 7.47221 Cost = 301.179
SSD = 293.692 n = 2651539 Reg = 7.46234 Cost = 301.155
SSD = 293.701 n = 2651539 Reg = 7.43305 Cost = 301.134
***Going to next resolution level***
SSD = 293.701 n = 2651539 Reg = 0.174525 Cost = 293.875
SSD = 292.612 n = 2651539 Reg = 0.179888 Cost = 292.792
SSD = 290.642 n = 2651539 Reg = 0.193639 Cost = 290.835
SSD = 287.32 n = 2651539 Reg = 0.230222 Cost = 287.55
SSD = 282.174 n = 2651539 Reg = 0.326287 Cost = 282.501
SSD = 274.783 n = 2651539 Reg = 0.56553 Cost = 275.349
SSD = 264.995 n = 2651539 Reg = 1.11214 Cost = 266.107
SSD = 253.674 n = 2651539 Reg = 2.20954 Cost = 255.883
SSD = 250.043 n = 2651539 Reg = 2.8208 Cost = 252.864
SSD = 238.851 n = 2651539 Reg = 5.04332 Cost = 243.894
SSD = 233.135 n = 2651539 Reg = 6.74675 Cost = 239.881
SSD = 227.316 n = 2651539 Reg = 9.20156 Cost = 236.518
SSD = 222.801 n = 2651539 Reg = 11.4236 Cost = 234.225
SSD = 219.613 n = 2651539 Reg = 13.2212 Cost = 232.835
SSD = 216.014 n = 2651539 Reg = 15.31 Cost = 231.324
SSD = 213.92 n = 2651539 Reg = 16.5257 Cost = 230.446
SSD = 211.934 n = 2651539 Reg = 17.6471 Cost = 229.581
SSD = 210.43 n = 2651539 Reg = 18.4658 Cost = 228.896
SSD = 209.349 n = 2651539 Reg = 19.009 Cost = 228.358
SSD = 208.438 n = 2651539 Reg = 19.4218 Cost = 227.86
SSD = 207.763 n = 2651539 Reg = 19.6799 Cost = 227.443
SSD = 7.3549 n = 320160 Reg = 0 Cost = 7.3549
SSD = 7.20695 n = 320160 Reg = 0.000523844 Cost = 7.20747
SSD = 7.20449 n = 320160 Reg = 0.000956274 Cost = 7.20545
SSD = 7.20439 n = 320160 Reg = 0.0010113 Cost = 7.2054
SSD = 7.20449 n = 320160 Reg = 0.00101181 Cost = 7.2055
SSD = 7.20451 n = 320160 Reg = 0.00101181 Cost = 7.20552
SSD = 7.20449 n = 320160 Reg = 0.00101181 Cost = 7.20551
SSD = 7.20448 n = 320160 Reg = 0.00101168 Cost = 7.20549
SSD = 7.2044 n = 320160 Reg = 0.00101143 Cost = 7.20541
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.2044 n = 320160 Reg = 0.00101131 Cost = 7.20541
SSD = 7.2044 n = 320160 Reg = 0.00101131 Cost = 7.20541
SSD = 7.20442 n = 320160 Reg = 0.00101131 Cost = 7.20543
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
SSD = 7.20441 n = 320160 Reg = 0.00101131 Cost = 7.20542
***Going to next resolution level***
SSD = 13.8494 n = 320160 Reg = 0.000510198 Cost = 13.85
SSD = 13.7689 n = 320160 Reg = 0.00231682 Cost = 13.7712
SSD = 13.7663 n = 320160 Reg = 0.00376071 Cost = 13.7701
SSD = 13.7661 n = 320160 Reg = 0.00401644 Cost = 13.7701
SSD = 13.7661 n = 320160 Reg = 0.0040155 Cost = 13.7701
SSD = 13.766 n = 320160 Reg = 0.00401549 Cost = 13.7701
SSD = 13.7662 n = 320160 Reg = 0.00402205 Cost = 13.7702
SSD = 13.7661 n = 320160 Reg = 0.00402205 Cost = 13.7702
SSD = 13.7662 n = 320160 Reg = 0.00402161 Cost = 13.7702
SSD = 13.7661 n = 320160 Reg = 0.0040193 Cost = 13.7701
SSD = 13.766 n = 320160 Reg = 0.00401633 Cost = 13.77
***Going to next resolution level***
SSD = 32.1576 n = 320160 Reg = 0.00110746 Cost = 32.1587
SSD = 31.7205 n = 320160 Reg = 0.0157899 Cost = 31.7363
SSD = 31.6869 n = 320160 Reg = 0.0342413 Cost = 31.7211
SSD = 31.6816 n = 320160 Reg = 0.0389182 Cost = 31.7206
SSD = 31.6814 n = 320160 Reg = 0.0391181 Cost = 31.7205
SSD = 31.6814 n = 320160 Reg = 0.0391179 Cost = 31.7205
***Going to next resolution level***
SSD = 54.9049 n = 320160 Reg = 0.0119324 Cost = 54.9168
SSD = 54.5287 n = 320160 Reg = 0.100606 Cost = 54.6293
SSD = 54.3435 n = 320160 Reg = 0.215336 Cost = 54.5589
SSD = 54.3055 n = 320160 Reg = 0.24873 Cost = 54.5543
SSD = 54.3037 n = 320160 Reg = 0.250623 Cost = 54.5543
SSD = 54.3039 n = 320160 Reg = 0.250562 Cost = 54.5544
SSD = 54.3043 n = 320160 Reg = 0.250132 Cost = 54.5544
SSD = 54.3052 n = 320160 Reg = 0.249239 Cost = 54.5544
SSD = 54.3054 n = 320160 Reg = 0.248826 Cost = 54.5542
SSD = 54.3051 n = 320160 Reg = 0.249279 Cost = 54.5543
SSD = 54.3054 n = 320160 Reg = 0.248901 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248835 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5544
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3054 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3054 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
SSD = 54.3055 n = 320160 Reg = 0.248827 Cost = 54.5543
***Going to next resolution level***
SSD = 54.3085 n = 320160 Reg = 0.104695 Cost = 54.4132
SSD = 53.9988 n = 320160 Reg = 0.261539 Cost = 54.2603
SSD = 53.8011 n = 320160 Reg = 0.408941 Cost = 54.21
SSD = 53.7613 n = 320160 Reg = 0.445841 Cost = 54.2071
SSD = 53.7597 n = 320160 Reg = 0.447387 Cost = 54.2071
SSD = 53.7596 n = 320160 Reg = 0.447583 Cost = 54.2072
SSD = 53.7596 n = 320160 Reg = 0.447583 Cost = 54.2072
SSD = 53.7595 n = 320160 Reg = 0.447581 Cost = 54.2071
SSD = 53.7596 n = 320160 Reg = 0.447568 Cost = 54.2071
SSD = 53.7596 n = 320160 Reg = 0.447505 Cost = 54.2071
SSD = 53.7597 n = 320160 Reg = 0.447412 Cost = 54.2071
SSD = 53.7597 n = 320160 Reg = 0.447389 Cost = 54.2071
SSD = 53.7597 n = 320160 Reg = 0.447387 Cost = 54.2071
***Going to next resolution level***
SSD = 115.923 n = 2657172 Reg = 1.60854 Cost = 117.531
SSD = 115.847 n = 2657172 Reg = 1.30603 Cost = 117.153
SSD = 115.848 n = 2657172 Reg = 1.1735 Cost = 117.021
SSD = 115.818 n = 2657172 Reg = 1.13514 Cost = 116.953
SSD = 115.823 n = 2657172 Reg = 1.0833 Cost = 116.906
SSD = 115.83 n = 2657172 Reg = 1.05116 Cost = 116.882
SSD = 115.841 n = 2657172 Reg = 1.02194 Cost = 116.863
SSD = 115.859 n = 2657172 Reg = 0.990799 Cost = 116.85
SSD = 115.867 n = 2657172 Reg = 0.971889 Cost = 116.839
SSD = 115.877 n = 2657172 Reg = 0.953676 Cost = 116.831
SSD = 115.885 n = 2657172 Reg = 0.939053 Cost = 116.824
***Going to next resolution level***
SSD = 349.199 n = 2657172 Reg = 0.507954 Cost = 349.707
SSD = 347.897 n = 2657172 Reg = 0.962418 Cost = 348.859
SSD = 347.059 n = 2657172 Reg = 1.25117 Cost = 348.31
SSD = 346.169 n = 2657172 Reg = 1.81134 Cost = 347.981
SSD = 345.446 n = 2657172 Reg = 2.12762 Cost = 347.574
SSD = 344.83 n = 2657172 Reg = 2.51744 Cost = 347.348
SSD = 344.012 n = 2657172 Reg = 3.05156 Cost = 347.063
SSD = 343.703 n = 2657172 Reg = 3.19093 Cost = 346.894
SSD = 343.335 n = 2657172 Reg = 3.39559 Cost = 346.731
SSD = 343.016 n = 2657172 Reg = 3.5999 Cost = 346.615
SSD = 342.817 n = 2657172 Reg = 3.69307 Cost = 346.51
***Going to next resolution level***
SSD = 485.232 n = 2657172 Reg = 0.0522726 Cost = 485.284
SSD = 479.304 n = 2657172 Reg = 0.210861 Cost = 479.515
SSD = 470.751 n = 2657172 Reg = 0.831924 Cost = 471.583
SSD = 460.314 n = 2657172 Reg = 2.42008 Cost = 462.734
SSD = 449.724 n = 2657172 Reg = 5.27766 Cost = 455.002
SSD = 440.91 n = 2657172 Reg = 8.78054 Cost = 449.69
SSD = 438.616 n = 2657172 Reg = 9.93221 Cost = 448.549
SSD = 433.214 n = 2657172 Reg = 12.8292 Cost = 446.043
SSD = 431.116 n = 2657172 Reg = 14.1491 Cost = 445.265
SSD = 429.332 n = 2657172 Reg = 15.2274 Cost = 444.56
SSD = 428.511 n = 2657172 Reg = 15.6462 Cost = 444.158
SSD = 428.314 n = 2657172 Reg = 15.534 Cost = 443.848
SSD = 428.342 n = 2657172 Reg = 15.318 Cost = 443.66
SSD = 428.637 n = 2657172 Reg = 14.8423 Cost = 443.479
SSD = 428.753 n = 2657172 Reg = 14.5986 Cost = 443.351
SSD = 428.733 n = 2657172 Reg = 14.4946 Cost = 443.227
SSD = 428.586 n = 2657172 Reg = 14.5405 Cost = 443.126
SSD = 428.477 n = 2657172 Reg = 14.56 Cost = 443.037
SSD = 428.397 n = 2657172 Reg = 14.5726 Cost = 442.97
SSD = 428.369 n = 2657172 Reg = 14.5411 Cost = 442.91
SSD = 428.331 n = 2657172 Reg = 14.5249 Cost = 442.856
***Going to next resolution level***
SSD = 428.331 n = 2657172 Reg = 0.347624 Cost = 428.679
SSD = 425.924 n = 2657172 Reg = 0.361394 Cost = 426.285
SSD = 421.792 n = 2657172 Reg = 0.397163 Cost = 422.189
SSD = 415.31 n = 2657172 Reg = 0.490357 Cost = 415.8
SSD = 406.007 n = 2657172 Reg = 0.722595 Cost = 406.729
SSD = 393.655 n = 2657172 Reg = 1.2572 Cost = 394.912
SSD = 378.695 n = 2657172 Reg = 2.37483 Cost = 381.07
SSD = 366.718 n = 2657172 Reg = 3.93423 Cost = 370.653
SSD = 358.95 n = 2657172 Reg = 5.23151 Cost = 364.181
SSD = 348.494 n = 2657172 Reg = 7.95103 Cost = 356.445
SSD = 340.456 n = 2657172 Reg = 10.5522 Cost = 351.009
SSD = 333.832 n = 2657172 Reg = 13.5644 Cost = 347.396
SSD = 328.457 n = 2657172 Reg = 16.3139 Cost = 344.771
SSD = 324.471 n = 2657172 Reg = 18.4746 Cost = 342.945
SSD = 320.403 n = 2657172 Reg = 20.7283 Cost = 341.131
SSD = 317.747 n = 2657172 Reg = 22.1937 Cost = 339.94
SSD = 315.205 n = 2657172 Reg = 23.5689 Cost = 338.774
SSD = 313.028 n = 2657172 Reg = 24.6989 Cost = 337.727
SSD = 311.397 n = 2657172 Reg = 25.5007 Cost = 336.897
SSD = 310.199 n = 2657172 Reg = 26.0509 Cost = 336.25
SSD = 309.074 n = 2657172 Reg = 26.5056 Cost = 335.579
SSD = 6.63038 n = 320160 Reg = 0 Cost = 6.63038
SSD = 6.37439 n = 320160 Reg = 0.00198203 Cost = 6.37637
SSD = 6.3688 n = 320160 Reg = 0.00469592 Cost = 6.37349
SSD = 6.36836 n = 320160 Reg = 0.00512854 Cost = 6.37349
SSD = 6.36834 n = 320160 Reg = 0.00513193 Cost = 6.37347
SSD = 6.36833 n = 320160 Reg = 0.00513681 Cost = 6.37347
***Going to next resolution level***
SSD = 11.8815 n = 320160 Reg = 0.00236551 Cost = 11.8839
SSD = 11.834 n = 320160 Reg = 0.00796062 Cost = 11.8419
SSD = 11.8255 n = 320160 Reg = 0.0139717 Cost = 11.8394
SSD = 11.8241 n = 320160 Reg = 0.0152404 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152796 Cost = 11.8394
SSD = 11.8241 n = 320160 Reg = 0.015279 Cost = 11.8394
SSD = 11.8241 n = 320160 Reg = 0.0152738 Cost = 11.8394
SSD = 11.8241 n = 320160 Reg = 0.0152545 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152421 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152406 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152406 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152406 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152406 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
SSD = 11.8241 n = 320160 Reg = 0.0152405 Cost = 11.8393
***Going to next resolution level***
SSD = 28.42 n = 320160 Reg = 0.00426014 Cost = 28.4243
SSD = 28.1887 n = 320160 Reg = 0.0302396 Cost = 28.219
SSD = 28.135 n = 320160 Reg = 0.0641674 Cost = 28.1991
SSD = 28.1257 n = 320160 Reg = 0.0727499 Cost = 28.1985
SSD = 28.1255 n = 320160 Reg = 0.0730654 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.0730578 Cost = 28.1985
SSD = 28.1253 n = 320160 Reg = 0.0731556 Cost = 28.1985
SSD = 28.1253 n = 320160 Reg = 0.0731537 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073138 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.0730896 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.0730612 Cost = 28.1985
SSD = 28.1255 n = 320160 Reg = 0.0730582 Cost = 28.1985
SSD = 28.1255 n = 320160 Reg = 0.0730582 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.0730581 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
SSD = 28.1254 n = 320160 Reg = 0.073058 Cost = 28.1985
***Going to next resolution level***
SSD = 51.9781 n = 320160 Reg = 0.0219763 Cost = 52.0001
SSD = 51.7301 n = 320160 Reg = 0.10906 Cost = 51.8391
SSD = 51.5996 n = 320160 Reg = 0.19539 Cost = 51.795
SSD = 51.576 n = 320160 Reg = 0.216673 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.575 n = 320160 Reg = 0.217676 Cost = 51.7927
SSD = 51.575 n = 320160 Reg = 0.217676 Cost = 51.7927
SSD = 51.575 n = 320160 Reg = 0.217678 Cost = 51.7927
SSD = 51.575 n = 320160 Reg = 0.217689 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.217727 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.217748 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.575 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
SSD = 51.5749 n = 320160 Reg = 0.21775 Cost = 51.7927
***Going to next resolution level***
SSD = 51.5755 n = 320160 Reg = 0.086577 Cost = 51.6621
SSD = 51.2775 n = 320160 Reg = 0.24398 Cost = 51.5215
SSD = 51.1438 n = 320160 Reg = 0.346443 Cost = 51.4902
SSD = 51.1232 n = 320160 Reg = 0.365625 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366585 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366585 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366585 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366584 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366583 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366581 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.36658 Cost = 51.4888
SSD = 51.1223 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
SSD = 51.1222 n = 320160 Reg = 0.366579 Cost = 51.4888
***Going to next resolution level***
SSD = 114.037 n = 2638167 Reg = 0.983431 Cost = 115.021
SSD = 114.009 n = 2638167 Reg = 0.838076 Cost = 114.847
SSD = 114.038 n = 2638167 Reg = 0.749055 Cost = 114.787
SSD = 114.042 n = 2638167 Reg = 0.713025 Cost = 114.755
SSD = 114.063 n = 2638167 Reg = 0.665742 Cost = 114.728
SSD = 114.068 n = 2638167 Reg = 0.642059 Cost = 114.71
SSD = 114.072 n = 2638167 Reg = 0.620317 Cost = 114.692
SSD = 114.086 n = 2638167 Reg = 0.590661 Cost = 114.677
SSD = 114.096 n = 2638167 Reg = 0.567583 Cost = 114.664
SSD = 114.112 n = 2638167 Reg = 0.540772 Cost = 114.653
SSD = 114.128 n = 2638167 Reg = 0.515504 Cost = 114.643
***Going to next resolution level***
SSD = 374.987 n = 2638167 Reg = 0.249883 Cost = 375.237
SSD = 374.152 n = 2638167 Reg = 0.583855 Cost = 374.736
SSD = 373.683 n = 2638167 Reg = 0.771191 Cost = 374.454
SSD = 373.173 n = 2638167 Reg = 1.11481 Cost = 374.287
SSD = 372.801 n = 2638167 Reg = 1.2815 Cost = 374.082
SSD = 372.487 n = 2638167 Reg = 1.48266 Cost = 373.97
SSD = 372.095 n = 2638167 Reg = 1.74234 Cost = 373.837
SSD = 371.966 n = 2638167 Reg = 1.79695 Cost = 373.763
SSD = 371.813 n = 2638167 Reg = 1.88542 Cost = 373.698
SSD = 371.662 n = 2638167 Reg = 1.99148 Cost = 373.653
SSD = 371.592 n = 2638167 Reg = 2.02212 Cost = 373.614
***Going to next resolution level***
SSD = 532.973 n = 2638167 Reg = 0.0290032 Cost = 533.002
SSD = 528.524 n = 2638167 Reg = 0.158074 Cost = 528.682
SSD = 522.112 n = 2638167 Reg = 0.677585 Cost = 522.79
SSD = 514.386 n = 2638167 Reg = 2.00856 Cost = 516.394
SSD = 506.465 n = 2638167 Reg = 4.42159 Cost = 510.887
SSD = 499.61 n = 2638167 Reg = 7.47629 Cost = 507.087
SSD = 496.381 n = 2638167 Reg = 9.19817 Cost = 505.579
SSD = 493.557 n = 2638167 Reg = 10.8218 Cost = 504.379
SSD = 491.009 n = 2638167 Reg = 12.4641 Cost = 503.473
SSD = 489.785 n = 2638167 Reg = 13.1865 Cost = 502.972
SSD = 489.147 n = 2638167 Reg = 13.3756 Cost = 502.522
SSD = 489.154 n = 2638167 Reg = 13.1496 Cost = 502.304
SSD = 489.28 n = 2638167 Reg = 12.8342 Cost = 502.114
SSD = 489.153 n = 2638167 Reg = 12.8342 Cost = 501.988
SSD = 489.016 n = 2638167 Reg = 12.8721 Cost = 501.888
SSD = 488.923 n = 2638167 Reg = 12.8859 Cost = 501.809
SSD = 488.884 n = 2638167 Reg = 12.8653 Cost = 501.749
SSD = 488.882 n = 2638167 Reg = 12.8138 Cost = 501.695
SSD = 488.947 n = 2638167 Reg = 12.7073 Cost = 501.655
SSD = 488.984 n = 2638167 Reg = 12.634 Cost = 501.618
SSD = 488.99 n = 2638167 Reg = 12.5995 Cost = 501.59
***Going to next resolution level***
SSD = 488.99 n = 2638167 Reg = 0.321769 Cost = 489.312
SSD = 486.606 n = 2638167 Reg = 0.335741 Cost = 486.942
SSD = 482.388 n = 2638167 Reg = 0.373947 Cost = 482.762
SSD = 475.518 n = 2638167 Reg = 0.479271 Cost = 475.997
SSD = 465.392 n = 2638167 Reg = 0.755202 Cost = 466.147
SSD = 451.71 n = 2638167 Reg = 1.41832 Cost = 453.129
SSD = 434.631 n = 2638167 Reg = 2.85538 Cost = 437.487
SSD = 417.886 n = 2638167 Reg = 5.28989 Cost = 423.176
SSD = 412.169 n = 2638167 Reg = 6.43936 Cost = 418.609
SSD = 394.428 n = 2638167 Reg = 11.5175 Cost = 405.946
SSD = 387.674 n = 2638167 Reg = 14.0314 Cost = 401.705
SSD = 378.318 n = 2638167 Reg = 18.6597 Cost = 396.977
SSD = 371.629 n = 2638167 Reg = 22.2097 Cost = 393.838
SSD = 367.274 n = 2638167 Reg = 24.7177 Cost = 391.992
SSD = 362.311 n = 2638167 Reg = 27.6576 Cost = 389.968
SSD = 359.305 n = 2638167 Reg = 29.4242 Cost = 388.729
SSD = 357.307 n = 2638167 Reg = 30.5456 Cost = 387.853
SSD = 355.461 n = 2638167 Reg = 31.5083 Cost = 386.969
SSD = 353.69 n = 2638167 Reg = 32.3867 Cost = 386.077
SSD = 352.834 n = 2638167 Reg = 32.7479 Cost = 385.582
SSD = 352.11 n = 2638167 Reg = 32.9652 Cost = 385.075
......@@ -4,7 +4,9 @@
workDir=/vols/Scratch/myelin/Mohamed/Merima_data_secondbatch
scriptDir=/vols/Scratch/alazari/preclinicalMPM_scripts/
subjList="20210312_192904_MS80_Merima_Doldcr_T2w_Diffusion_1_3"
subjList="20210308_191125_MS86_Merima_Doldcr_T2w_Diffusion_1_2
20210301_160217_MS74_MS74_MCAO_T2w_Diffusion_QSM_round2_1_3
20210302_195833_MS75_MS74_MCAO_T2w_Diffusion_QSM_1_2"
# "20210301_160217_MS74_MS74_MCAO_T2w_Diffusion_QSM_round2_1_3
# 20210302_195833_MS75_MS74_MCAO_T2w_Diffusion_QSM_1_2
......
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