adding svd/pca analysis file settings

utils/svd_analysis_settings.ini

+[ENCODER]
+first_kernel_size = 9
+first_convolution_stride = 1
+input_channels = 1
+output_channels = 32
+max_number_channels = 128
+kernel_size = 3
+convolution_stride = 2
+number_of_encoder_blocks = 5
+transformer_blocks_stride = 1
+dropout = 0
+custom_weight_reset_flag = False
+
+[DECODER]
+number_of_encoder_blocks = 5
+kernel_classification = 9
+pool_kernel_size = 3
+pool_stride = 2
+dropout = 0
+final_activation = 'tanh'
+number_of_classes = 1
+custom_weight_reset_flag = False
+
+[MISC]
+save_model_directory = "saved_models"
+
+[TRAINING]
+pretrained_network_name = "VA2-1.pth.tar"
+
+[MAPPING]
+load_using_path = True
+trained_model_path = "saved_models/VA2-1.pth.tar"
+prediction_output_path = "SVD_VA2-1_predictions"
+prediction_output_database_name = "output_test_data.h5"
+prediction_reconstructed_output_database_name = "output_reconstructed_test_data.h5"
+svd_output_database_name = "output_svd_data.pkl"
+data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
+mapping_data_file = "dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
+mapping_targets_file = "fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
+data_list_reduced = "datasets/test_reduced.txt"
+data_list_all = "datasets/test_all.txt"
+evaluate_all_data = False
+brain_mask_path = "utils/MNI152_T1_2mm_brain_mask.nii.gz"
+rsfmri_mean_mask_path = "utils/mean_dr_stage2.nii.gz"
+dmri_mean_mask_path = "utils/mean_tractsNormSummed_downsampled.nii.gz"
+mean_mask_path = "utils/mean_dr_stage2.nii.gz"
+regression_factors = "datasets/regression_weights.pkl"
+mean_regression_flag = True
+mean_regression_all_flag = True
+mean_subtraction_flag = False
+scale_volumes_flag = True
+normalize_flag = False
+minus_one_scaling_flag = True
+negative_flag = False
+outlier_flag = True
+shrinkage_flag = False
+hard_shrinkage_flag = False
+crop_flag = True
+device = 0
+exit_on_error = True
+cross_domain_x2x_flag = False
+cross_domain_y2y_flag = False
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