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Andrei-Claudiu Roibu
BrainMapper
Commits
574e0817
Commit
574e0817
authored
Sep 08, 2020
by
Andrei Roibu
Browse files
fixing cropping buggs
parent
58554941
Changes
1
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Inline
Side-by-side
utils/data_evaluation_utils.py
View file @
574e0817
...
...
@@ -787,14 +787,14 @@ def _generate_target_volume(file_path,
volume
=
data_utils
.
load_and_preprocess_targets
(
file_path
,
cross_domain_x2x_flag
,
crop_flag
=
False
)
if
mean_regression_flag
==
True
:
volume
=
_regress_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
regression_factors
,
crop_flag
,
cross_domain_x2x_flag
,
mean_regression_all_flag
)
volume
=
_regress_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
regression_factors
,
cross_domain_x2x_flag
,
mean_regression_all_flag
,
crop_flag
=
False
)
elif
mean_subtraction_flag
==
True
:
volume
=
_subtract_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
crop_flag
,
cross_domain_x2x_flag
)
volume
=
_subtract_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
cross_domain_x2x_flag
,
crop_flag
=
False
)
return
volume
def
_regress_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
regression_factors
,
crop_flag
,
cross_domain_x2x_flag
,
mean_regression_all_flag
):
def
_regress_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
regression_factors
,
cross_domain_x2x_flag
,
mean_regression_all_flag
,
crop_flag
=
False
):
""" Target Regression
This function regresse the group mean from the target volume using the saved regression weights.
...
...
@@ -839,7 +839,7 @@ def _regress_target(volume, subject, dmri_mean_mask_path, rsfmri_mean_mask_path,
return
regressed_volume
def
_subtract_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
crop_flag
,
cross_domain_x2x_flag
):
def
_subtract_target
(
volume
,
subject
,
dmri_mean_mask_path
,
rsfmri_mean_mask_path
,
cross_domain_x2x_flag
,
crop_flag
=
False
):
""" Target Subtraction
This function subtracts the group mean from the target volume using the saved regression weights.
...
...
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