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Andrei-Claudiu Roibu
BrainMapper
Commits
75530d88
Commit
75530d88
authored
May 29, 2020
by
Andrei-Claudiu Roibu
🖥
Browse files
improved settings layout + added AE settings
parent
0997b994
Changes
2
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settings.ini
View file @
75530d88
...
...
@@ -40,15 +40,19 @@ use_last_checkpoint = False
kernel_heigth
=
3
kernel_width
=
3
kernel_depth
=
3
kernel_classification
=
1
;
kernel_classification = 1
input_channels
=
1
output_channels
=
64
convolution_stride
=
1
dropout
=
0.2
pool_kernel_size
=
2
;
pool_kernel_size = 2
pool_stride
=
2
up_mode
=
"upconv"
number_of_classes
=
1
; ---> parameters for the ResNet CGAN
pool_kernel_size
=
3
kernel_classification
=
7
[MISC]
save_model_directory
=
"saved_models"
...
...
settings_evaluation.ini
View file @
75530d88
[MAPPING]
trained_model_path
=
"saved_models/finetuned_alldata.pth.tar"
trained_model_path
=
"saved_models/test24.pth.tar"
prediction_output_path
=
"test24_predictions"
data_directory
=
"/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
mapping_data_file
=
"dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
data_list
=
"datasets/test.txt"
prediction_output_path
=
"network_predictions"
brain_mask_path
=
"utils/MNI152_T1_2mm_brain_mask.nii.gz"
mean_mask_path
=
"utils/mean_dr_stage2.nii.gz"
scaling_factors
=
"datasets/scaling_factors.pkl"
...
...
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