improved settings layout + added AE settings

settings.ini

@@ -40,15 +40,19 @@ use_last_checkpoint = False
 kernel_heigth = 3
 kernel_width = 3
 kernel_depth = 3
-kernel_classification = 1
+; kernel_classification = 1
 input_channels = 1
 output_channels = 64
 convolution_stride = 1
 dropout = 0.2
-pool_kernel_size = 2
+; pool_kernel_size = 2
 pool_stride = 2
 up_mode = "upconv"
 number_of_classes = 1
+; ---> parameters for the ResNet CGAN
+pool_kernel_size = 3
+kernel_classification = 7
+
 
 [MISC]
 save_model_directory = "saved_models"

settings_evaluation.ini

 [MAPPING]
-trained_model_path = "saved_models/finetuned_alldata.pth.tar"
+trained_model_path = "saved_models/test24.pth.tar"
+prediction_output_path = "test24_predictions"
 data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
 mapping_data_file = "dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
 data_list = "datasets/test.txt"
-prediction_output_path = "network_predictions"
 brain_mask_path = "utils/MNI152_T1_2mm_brain_mask.nii.gz"
 mean_mask_path = "utils/mean_dr_stage2.nii.gz"
 scaling_factors = "datasets/scaling_factors.pkl"