Commit e6579311 authored by Andrei-Claudiu Roibu's avatar Andrei-Claudiu Roibu 🖥
Browse files

added train, test & validation list names

parent 2b63a9dc
[DATA]
data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_split_flag = True
data_directory = "../well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_split_flag = False
train_percentage = 90
validation_percentage = 5
train_list = 'train.txt'
validation_list = 'validation.txt'
test_list = 'test.txt'
train_data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
train_output_targets = "/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
test_data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
......@@ -28,6 +31,7 @@ final_model_output_file = "finetuned_alldata.pth.tar"
[NETWORK]
kernel_heigth = 5
kernel_width = 5
kernel_depth = 5
kernel_classification = 1
input_channels = 1
output_channels = 64
......@@ -35,7 +39,6 @@ convolution_stride = 1
dropout = 0.2
pool_kernel_size = 2
pool_stride = 2
#Valid options: upconv, upsample, unpool
up_mode = "upconv"
number_of_classes = 1
......@@ -52,6 +55,6 @@ data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
output_targets = "/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
data_list = "test.txt"
#Valid options: coronal, sagittal, axial
orientation = "coronal"
saved_predictions_directory = "predictions"
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