added train, test & validation list names

settings.ini

 [DATA]
-data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
-data_split_flag = True
+data_directory = "../well/win-biobank/projects/imaging/data/data3/subjectsAll/"
+data_split_flag = False
 train_percentage = 90
 validation_percentage = 5
+train_list = 'train.txt'
+validation_list = 'validation.txt'
+test_list = 'test.txt'
 train_data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
 train_output_targets = "/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
 test_data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
@@ -28,6 +31,7 @@ final_model_output_file = "finetuned_alldata.pth.tar"
 [NETWORK]
 kernel_heigth = 5
 kernel_width = 5
+kernel_depth = 5
 kernel_classification = 1
 input_channels = 1
 output_channels = 64
@@ -35,7 +39,6 @@ convolution_stride = 1
 dropout = 0.2
 pool_kernel_size = 2
 pool_stride = 2
-#Valid options: upconv, upsample, unpool
 up_mode = "upconv"
 number_of_classes = 1
 
@@ -52,6 +55,6 @@ data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
 data_file = "/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
 output_targets = "/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
 data_list = "test.txt"
-#Valid options: coronal, sagittal, axial
 orientation = "coronal"
 saved_predictions_directory = "predictions"
+