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Andrei-Claudiu Roibu
BrainMapper
Commits
e6579311
Commit
e6579311
authored
Apr 09, 2020
by
Andrei-Claudiu Roibu
🖥
Browse files
added train, test & validation list names
parent
2b63a9dc
Changes
1
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settings.ini
View file @
e6579311
[DATA]
data_directory
=
"/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_split_flag
=
Tru
e
data_directory
=
"
..
/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_split_flag
=
Fals
e
train_percentage
=
90
validation_percentage
=
5
train_list
=
'train.txt'
validation_list
=
'validation.txt'
test_list
=
'test.txt'
train_data_file
=
"/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
train_output_targets
=
"/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
test_data_file
=
"/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
...
...
@@ -28,6 +31,7 @@ final_model_output_file = "finetuned_alldata.pth.tar"
[NETWORK]
kernel_heigth
=
5
kernel_width
=
5
kernel_depth
=
5
kernel_classification
=
1
input_channels
=
1
output_channels
=
64
...
...
@@ -35,7 +39,6 @@ convolution_stride = 1
dropout
=
0.2
pool_kernel_size
=
2
pool_stride
=
2
#Valid options: upconv, upsample, unpool
up_mode
=
"upconv"
number_of_classes
=
1
...
...
@@ -52,6 +55,6 @@ data_directory = "/well/win-biobank/projects/imaging/data/data3/subjectsAll/"
data_file
=
"/dMRI/autoptx_preproc/tractsNormSummed.nii.gz"
output_targets
=
"/fMRI/rfMRI_25.dr/dr_stage2.nii.gz"
data_list
=
"test.txt"
#Valid options: coronal, sagittal, axial
orientation
=
"coronal"
saved_predictions_directory
=
"predictions"
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