Commits · 8d27cb554103ff16a4be93aebaa5d29cfff2ee19 · Andrei-Claudiu Roibu / BrainMapper · GitLab

29 Apr, 2020 6 commits
- fixed bugs + deleting existing data files to prevent overwrite · 8d27cb55
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  8d27cb55
- added masking to eval path, eliminated batch option, set min_max to none in loading · 5e6bb054
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  5e6bb054
- fixed bug with loading mask onto gpu · 31c05c0c
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  31c05c0c
- added visual indication of current volume being mapped · d189eaa8
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  d189eaa8
- added masking between network output and loss calculation · 4f522872
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  4f522872
- fixed bug preventing stop if score=best_score · d12bcf8e
  Andrei-Claudiu Roibu authored Apr 29, 2020
  
  d12bcf8e
28 Apr, 2020 3 commits
- bug fixes · 52785b10
  Andrei-Claudiu Roibu authored Apr 28, 2020
  
  52785b10
- fixed fslpy Image import bug · 39935616
  Andrei-Claudiu Roibu authored Apr 28, 2020
  
  39935616
- debugged eval-mapper, added del for past checkpoints, fixed bugs · e3f6a179
  Andrei-Claudiu Roibu authored Apr 28, 2020
  
  e3f6a179
27 Apr, 2020 2 commits
- added classical 3d unet architecture · 9e8bca8f
  Andrei-Claudiu Roibu authored Apr 27, 2020
  
  9e8bca8f
- bug fixes for better cross validation · d492260e
  Andrei-Claudiu Roibu authored Apr 27, 2020
  
  d492260e
25 Apr, 2020 1 commit
- bug fixes for memory bleeds during cross validation · 09367ded
  Andrei-Claudiu Roibu authored Apr 25, 2020
  
  09367ded
23 Apr, 2020 4 commits
- bug fixes + updates for HPC deployment · d15c6593
  Andrei-Claudiu Roibu authored Apr 23, 2020
  
  d15c6593
- added way to direct os to home directory · b567cb30
  Andrei-Claudiu Roibu authored Apr 23, 2020
  
  b567cb30
- fixed torch version to 1.4 to prevent HPC issues · ca734793
  Andrei-Claudiu Roibu authored Apr 23, 2020
  
  ca734793
- reverted to tensorboardX due to HPC demands · 17bf6050
  Andrei-Claudiu Roibu authored Apr 23, 2020
  
  17bf6050
22 Apr, 2020 9 commits
- Merge branch 'master' of git.fmrib.ox.ac.uk:aroibu/functionmapper · a4fc6fde
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  a4fc6fde
- adding numpy import · 58ce85e0
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  58ce85e0
- Delete test.txt · fc622f09
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  fc622f09
- Delete train.txt · 446c49c1
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  446c49c1
- Delete validation.txt · add4b5e8
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  add4b5e8
- fixed several bugs for cross-validation · 73483fde
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  73483fde
- added cross-validation option to the training function and solver · b22c8428
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  b22c8428
- started adding KFold cross validation - completed data stream · 0b755689
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  0b755689
- added ability to use a txt file as input · 72461c75
  Andrei-Claudiu Roibu authored Apr 22, 2020
  
  72461c75
20 Apr, 2020 6 commits
- eliminated redundant variable for early stop · 4d2e9395
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  4d2e9395
- added variable for selecting smaller datasets · 3e3c9426
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  3e3c9426
- added tensorboard · c199ec38
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  c199ec38
- changed test logs name to validation · da80e6cb
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  da80e6cb
- added early stopping to prevent overfitting and long training · 4c63df04
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  4c63df04
- changed logging util from tensorboardX to torch.utils.tensorboard · 0b7bd09d
  Andrei-Claudiu Roibu authored Apr 20, 2020
  
  0b7bd09d
16 Apr, 2020 9 commits
- added data_shuffling flag and debugged run · 5514e9b2
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  5514e9b2
- TRAIN WORKS! + code clean, pep8 formated, debug coms deleted · a2b51e13
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  a2b51e13
- deleted pool_indices - not needed for upconv and leaking memory · 98e87284
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  98e87284
- fixed bug in model.test_if_cuda · 46d932ae
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  46d932ae
- fixed model.is_cuda bug · 581f83b5
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  581f83b5
- updated settings for debugging · 29266e50
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  29266e50
- reorganized deprecated nets, code clearning · 9338b510
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  9338b510
- debugging + commenting out functions deprecated · f982dfaf
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  f982dfaf
- debrecated several losses which are useful for classification, but not regression · 92dfa3ee
  Andrei-Claudiu Roibu authored Apr 16, 2020
  
  92dfa3ee