Commits · aa74b23e20124e743ddf02ef5b080b6564c37a87 · Andrei-Claudiu Roibu / BrainMapper · GitLab

14 Aug, 2020 2 commits
- added flag for tanh/sig/none change · ca61c821
  Andrei Roibu authored Aug 14, 2020
  
  ca61c821
- added flag for [-1,1] scaling allowing for unscaled volumes + updated scaling params · b79d46ce
  Andrei Roibu authored Aug 14, 2020
  
  b79d46ce
31 Jul, 2020 1 commit
- deleted print statement · 9a385a85
  Andrei Roibu authored Jul 31, 2020
  
  9a385a85
30 Jul, 2020 1 commit
- added volume cropping to reduce storage and network req + inc speed · 8d308d99
  Andrei Roibu authored Jul 30, 2020
  
  8d308d99
29 Jul, 2020 8 commits
- bug fixes · 2d2cd6eb
  Andrei Roibu authored Jul 29, 2020
  
  2d2cd6eb
- adding tracts population mean · 5e5d88cc
  Andrei Roibu authored Jul 29, 2020
  
  5e5d88cc
- separeted data preprocessing from main run call, added storing as hdf5 database · 214a3932
  Andrei Roibu authored Jul 29, 2020
  
  214a3932
- moved all data preprocessing functions to preprocessor.py · 29d9668e
  Andrei Roibu authored Jul 29, 2020
  
  29d9668e
- updated imports · f3926d2d
  Andrei Roibu authored Jul 29, 2020
  
  f3926d2d
- updated imports, added shrinkage · 26a7f66b
  Andrei Roibu authored Jul 29, 2020
  
  26a7f66b
- created common_utils for creating folders - easier importing · 10ce17b4
  Andrei Roibu authored Jul 29, 2020
  
  10ce17b4
- moved settings reader to utils folder · 46cc992a
  Andrei Roibu authored Jul 29, 2020
  
  46cc992a
21 Jul, 2020 2 commits
- prepared execution of first VA code + fixed bugs · 159001d8
  Andrei Roibu authored Jul 21, 2020
  
  159001d8
- added mean subtraction back as an option · 1e1a86bb
  Andrei Roibu authored Jul 21, 2020
  
  1e1a86bb
17 Jul, 2020 1 commit
- added new scaling based on uk biobank stats · 3447ca2a
  Andrei Roibu authored Jul 17, 2020
  
  3447ca2a
15 Jul, 2020 5 commits
- added dropout for testing in all layers · e37a0fe0
  Andrei Roibu authored Jul 15, 2020
  
  e37a0fe0
- formated code · 590e1b32
  Andrei Roibu authored Jul 15, 2020
  
  590e1b32
- corrected code bugs preventing database creation · afffad8e
  Andrei Roibu authored Jul 15, 2020
  
  afffad8e
- deleted labels generator call · 019ecb82
  Andrei Roibu authored Jul 15, 2020
  
  019ecb82
- updated correlation evaluation · 3b1b237b
  Andrei Roibu authored Jul 15, 2020
  
  3b1b237b
13 Jul, 2020 2 commits
- fixed saving function · 9a088f2f
  Andrei Roibu authored Jul 13, 2020
  
  9a088f2f
- added regression for evaluation · f5d7e08b
  Andrei Roibu authored Jul 13, 2020
  
  f5d7e08b
10 Jul, 2020 2 commits
- script for computing BBwide statistics · 9f6e9cb1
  Andrei Roibu authored Jul 10, 2020
  
  9f6e9cb1
- replaced mean subtraction with mean regression, fixed data file reader · cb9bbda3
  Andrei Roibu authored Jul 10, 2020
  
  cb9bbda3
02 Jul, 2020 4 commits
- added code for calculating the linear regression weights · 209ce07e
  Andrei Roibu authored Jul 02, 2020
  
  209ce07e
- new function for calculating the mean across subjects · 221ddd6d
  Andrei Roibu authored Jul 02, 2020
  
  221ddd6d
- now also returning subject number in directory reader · 5931e6e6
  Andrei Roibu authored Jul 02, 2020
  
  5931e6e6
- eliminated deprecated functions, updated branch for AE · aeb4decd
  Andrei Roibu authored Jul 02, 2020
  
  aeb4decd
29 May, 2020 5 commits
- added modules for AE and scaling for UNet · bd5515dc
  Andrei-Claudiu Roibu authored May 29, 2020
  
  bd5515dc
- introduced min delta for early stopping · 9ca11f63
  Andrei-Claudiu Roibu authored May 29, 2020
  
  9ca11f63
- added several forms of data scaling · f214cf4c
  Andrei-Claudiu Roibu authored May 29, 2020
  
  f214cf4c
- loss per epoch is not the mean, absolute change is printed · f5c757b6
  Andrei-Claudiu Roibu authored May 29, 2020
  
  f5c757b6
- added correlation evaluation, scaling for evaluation · a817b485
  Andrei-Claudiu Roibu authored May 29, 2020
  
  a817b485
07 May, 2020 1 commit
- added input/output scaling, fixed overfitting network save, delete old checkpoints · 15ffbc18
  Andrei-Claudiu Roibu authored May 07, 2020
  
  15ffbc18
05 May, 2020 1 commit
- fixed data logging bugs · 7c0603da
  Andrei-Claudiu Roibu authored May 05, 2020
  
  7c0603da
01 May, 2020 5 commits
- shallow dense block + competitive dense blocks architectures · 12ce71d4
  Andrei-Claudiu Roibu authored May 01, 2020
  
  12ce71d4
- added dense block Unet architecture · bd826338
  Andrei-Claudiu Roibu authored May 01, 2020
  
  bd826338
- fixed bug: mask now selecting right channel + being passed to cpu · 7e359259
  Andrei-Claudiu Roibu authored May 01, 2020
  
  7e359259
- added masking network outputs and demeaning targets · 2ab6e668
  Andrei-Claudiu Roibu authored May 01, 2020
  
  2ab6e668
- adding dualreg subject mean · b8095ea6
  Andrei-Claudiu Roibu authored May 01, 2020
  
  b8095ea6