Commits · master · Andrei-Claudiu Roibu / BrainMapper

19 Oct, 2020 7 commits
- Merge branch 'CrossDomain_autoencoder' into 'master' · 7da22503
  Andrei-Claudiu Roibu authored Oct 19, 2020
```
Cross domain autoencoder

See merge request !4
```
  7da22503
- Merge branch 'master' into 'CrossDomain_autoencoder' · 5e0551e3
  Andrei-Claudiu Roibu authored Oct 19, 2020
```
# Conflicts:
#   run.py
#   settings.ini
#   utils/data_evaluation_utils.py
#   utils/hdf5_settings.ini
#   utils/preprocessor.py
```
  5e0551e3
- Merge branch 'autoencoder_2' into 'master' · aa74b23e
  Andrei-Claudiu Roibu authored Oct 19, 2020
```
Autoencoder 2

See merge request !3
```
  aa74b23e
- Merge branch 'autoencoder' into 'master' · 92f1b83d
  Andrei-Claudiu Roibu authored Oct 19, 2020
```
Autoencoder

See merge request !2
```
  92f1b83d
- adding svd/pca analysis file settings · 38498d69
  Andrei-Claudiu Roibu authored Oct 19, 2020
  
  38498d69
- created standalone svd/pca analysis script for pretrained autoencoders · 9a98d8cc
  Andrei-Claudiu Roibu authored Oct 19, 2020
  
  9a98d8cc
- updated to ignore mock_job script · 2e9a8588
  Andrei-Claudiu Roibu authored Oct 19, 2020
  
  2e9a8588
08 Sep, 2020 16 commits
- branch 'CrossDomain_autoencoder' of git.fmrib.ox.ac.uk:aroibu/functionmapper... · 79d95fdf
  Andrei-Claudiu Roibu authored Sep 08, 2020
```
branch 'CrossDomain_autoencoder' of git.fmrib.ox.ac.uk:aroibu/functionmapper into CrossDomain_autoencoder
```
  79d95fdf
- fixing cropping buggs · 574e0817
  Andrei Roibu authored Sep 08, 2020
  
  574e0817
- updating branches · 0da347fc
  Andrei-Claudiu Roibu authored Sep 08, 2020
  
  0da347fc
- solving positional argument bug in load targets · 58554941
  Andrei Roibu authored Sep 08, 2020
  
  58554941
- Merge branch 'CrossDomain_autoencoder' of... · 864342ba
  Andrei-Claudiu Roibu authored Sep 08, 2020
```
Merge branch 'CrossDomain_autoencoder' of git.fmrib.ox.ac.uk:aroibu/functionmapper into CrossDomain_autoencoder
```
  864342ba
- evaluating un-cropped images · b43012db
  Andrei Roibu authored Sep 08, 2020
  
  b43012db
- Merge branch 'CrossDomain_autoencoder' of... · 11d07da4
  Andrei-Claudiu Roibu authored Sep 08, 2020
```
Merge branch 'CrossDomain_autoencoder' of git.fmrib.ox.ac.uk:aroibu/functionmapper into CrossDomain_autoencoder

updating branches
```
  11d07da4
- updating cluster branch to source · eda104f9
  Andrei-Claudiu Roibu authored Sep 08, 2020
  
  eda104f9
- changed output stats type to csv · ea89c4db
  Andrei Roibu authored Sep 08, 2020
  
  ea89c4db
- bug fig for df save to file · 282671ca
  Andrei Roibu authored Sep 08, 2020
  
  282671ca
- fixed bug where the path was passed to pkl not the df · 72e9a9c9
  Andrei Roibu authored Sep 08, 2020
  
  72e9a9c9
- fixed output_database_handle ref before assignment bug · 78f6ad04
  Andrei Roibu authored Sep 08, 2020
  
  78f6ad04
- argparse evaluate-data bug fix · a19223f9
  Andrei Roibu authored Sep 08, 2020
  
  a19223f9
- would never want to evaluate mapping for all subjects - now corrected · 2cc7a868
  Andrei Roibu authored Sep 08, 2020
  
  2cc7a868
- added call for data-based evaluation · 7e06facb
  Andrei Roibu authored Sep 08, 2020
  
  7e06facb
- added ability to calculate statistics for test set · 815f5223
  Andrei Roibu authored Sep 08, 2020
  
  815f5223
02 Sep, 2020 1 commit
- wrote evaluate data function which evaluates all data and saves it as an h5 db · 01d776d1
  Andrei Roibu authored Sep 02, 2020
  
  01d776d1
28 Aug, 2020 1 commit
- updated patience to 5 from 2 · 8248443a
  Andrei Roibu authored Aug 28, 2020
  
  8248443a
27 Aug, 2020 1 commit
- saving valid checkpoints, fixed bugs in overfitting prevention for multiple epoch patiece · de062ac3
  Andrei Roibu authored Aug 27, 2020
  
  de062ac3
24 Aug, 2020 3 commits
- bug fix in evaluate mapping call · 235db1fd
  Andrei Roibu authored Aug 24, 2020
  
  235db1fd
- added cross domain x2x y2y flags · e9aadb64
  Andrei Roibu authored Aug 24, 2020
  
  e9aadb64
- added mapping targets file to the eval run call · afb013e3
  Andrei Roibu authored Aug 24, 2020
  
  afb013e3
21 Aug, 2020 4 commits
- added cross-domain x2x y2y x2y options to mapping eval · 8cbb592b
  Andrei Roibu authored Aug 21, 2020
  
  8cbb592b
- removed save-checkpoing flag return · 1c12a511
  Andrei Roibu authored Aug 21, 2020
  
  1c12a511
- removed last checkpoint del, added code for keeping track of early stops · 852cdef8
  Andrei Roibu authored Aug 21, 2020
  
  852cdef8
- eliminated val loss return, added new run argument modes · 9d940084
  Andrei Roibu authored Aug 21, 2020
  
  9d940084
20 Aug, 2020 3 commits
- initialising previous checkpoint, loss, mse with the solver · 4810e6e6
  Andrei Roibu authored Aug 20, 2020
  
  4810e6e6
- added previous loss, MSE and checkpoint to checkpoint · 171d95ec
  Andrei Roibu authored Aug 20, 2020
  
  171d95ec
- added early stopping counter and best score to the checkpoints · 9c3d9d33
  Andrei Roibu authored Aug 20, 2020
  
  9c3d9d33
19 Aug, 2020 4 commits
- uncommented the delete path code · 7b7ee1b0
  Andrei Roibu authored Aug 19, 2020
  
  7b7ee1b0
- commented out calls to matplotlib.plt to prevent cluster errors · 10eab075
  Andrei Roibu authored Aug 19, 2020
  
  10eab075
- commented out the removal of the logs dir if path exists when using last checkpoint · 76c6a42a
  Andrei Roibu authored Aug 19, 2020
  
  76c6a42a
- changed 'x2x' to "x2x" · 55ffe4c0
  Andrei Roibu authored Aug 19, 2020
  
  55ffe4c0