Commit 2e47fd50 authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

TEST: deprecated module

parent 45fbd5c2
......@@ -8,7 +8,7 @@ import pytest
import fsl.scripts.resample_image as resample_image
import fsl.utils.transform as transform
import fsl.transform.affine as affine
from fsl.utils.tempdir import tempdir
from fsl.data.image import Image
......@@ -22,22 +22,22 @@ def test_resample_image_shape():
resample_image.main('image resampled -s 20,20,20'.split())
res = Image('resampled')
expv2w = transform.concat(
expv2w = affine.concat(
img.voxToWorldMat,
transform.scaleOffsetXform([0.5, 0.5, 0.5], 0))
affine.scaleOffsetXform([0.5, 0.5, 0.5], 0))
assert np.all(np.isclose(res.shape, (20, 20, 20)))
assert np.all(np.isclose(res.pixdim, (0.5, 0.5, 0.5)))
assert np.all(np.isclose(res.voxToWorldMat, expv2w))
assert np.all(np.isclose(
np.array(transform.axisBounds(res.shape, res.voxToWorldMat)) - 0.25,
transform.axisBounds(img.shape, img.voxToWorldMat)))
np.array(affine.axisBounds(res.shape, res.voxToWorldMat)) - 0.25,
affine.axisBounds(img.shape, img.voxToWorldMat)))
resample_image.main('image resampled -s 20,20,20 -o corner'.split())
res = Image('resampled')
assert np.all(np.isclose(
transform.axisBounds(res.shape, res.voxToWorldMat),
transform.axisBounds(img.shape, img.voxToWorldMat)))
affine.axisBounds(res.shape, res.voxToWorldMat),
affine.axisBounds(img.shape, img.voxToWorldMat)))
def test_resample_image_shape_4D():
......@@ -65,9 +65,9 @@ def test_resample_image_dim():
resample_image.main('image resampled -d 0.5,0.5,0.5'.split())
res = Image('resampled')
expv2w = transform.concat(
expv2w = affine.concat(
img.voxToWorldMat,
transform.scaleOffsetXform([0.5, 0.5, 0.5], 0))
affine.scaleOffsetXform([0.5, 0.5, 0.5], 0))
assert np.all(np.isclose(res.shape, (20, 20, 20)))
assert np.all(np.isclose(res.pixdim, (0.5, 0.5, 0.5)))
......
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