Commit 18c307ff authored by Christoph Arthofer's avatar Christoph Arthofer
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lesion + brain mask for moving image in registration; mean for 2 iterations...

lesion + brain mask for moving image in registration; mean for 2 iterations and median for all following iterations; additional iteration 7
parent 92a58a34
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......@@ -10,7 +10,8 @@ ext_txt=.txt
ident{ext_mat} (identity_mat)
{sub_id}
{sub_id}_T1_clamped{ext_nii} (T1_head_clamped)
{sub_id}_T2Lesion_in_T1_inverse{ext_nii} (inverse_lesion_mask_in_T1)
{sub_id}_T1_weighted_brain_mask{ext_nii} (T1_weighted_brain_mask)
{sub_id}_T2Lesion_in_T1_inverse_and_brain_mask{ext_nii} (inverse_lesion_and_brain_mask_in_T1)
log (log_dir)
scripts (script_dir)
affine_it1 (affine_it1_dir)
......
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