latest version

run_template_construction.py

@@ -368,7 +368,7 @@ def averageImages(img_paths, out_path, mod='average', norm_bool=False):
 
     @param img_paths:             List of filepaths
     @param out_path:              Path to average/median output image
-    @param mode:                  Choose between 'average' or 'median' image.
+    @param mod:                   Choose between 'average' or 'median' image.
     @param norm_bool:             Normalise intensities of each image before averaging true or false
 
     """
@@ -965,7 +965,7 @@ if __name__ == "__main__":
                     f.write(cmd)
             # job_ids[6] = submitJob(tag+'_'+task_name, log_dir, script=script_path, queue=cpuq,
             #                            wait_for=[job_ids[4]])
-            job_ids[6] = submitJob(script_path, tag + '_' + task_name, log_dir, queue=cpuq, wait_for=[job_ids[4]],
+            job_ids[6] = submitJob(script_path, tag + '_' + task_name, log_dir, queue=cpuq, wait_for=list(itemgetter(*[2,4])(job_ids)),
                                    array_task=True)
             print('submitted: ' + task_name)