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Christoph Arthofer
ms_templates
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585f852d
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585f852d
authored
Mar 25, 2021
by
Christoph Arthofer
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README
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@@ -12,12 +12,13 @@ conda install -c conda-forge fslpy
pip
install
file-tree file-tree-fsl
```
The MMORF singularity package has to be downloaded and the
path
set:
-
The MMORF singularity package has to be downloaded and the
environment variable
`MMORFDIR`
set:
```
bash
export
MMORFDIR
=
/path/to/mmorf.sif
```
Job submission to a computing cluster is currently based on FSL's
`fsl_sub`
command line tool,
-
It is assumed that FSL is installed.
-
Job submission to a computing cluster is currently based on FSL's
`fsl_sub`
command line tool,
which assumes that the computing cluster is managed by SGE.
## Running the template construction pipeline
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