README

README.md

@@ -12,12 +12,13 @@ conda install -c conda-forge fslpy
 pip install file-tree file-tree-fsl
 ```
 
-The MMORF singularity package has to be downloaded and the path set:
+- The MMORF singularity package has to be downloaded and the environment variable `MMORFDIR` set:
 ```bash
 export MMORFDIR=/path/to/mmorf.sif
 ```
 
-Job submission to a computing cluster is currently based on FSL's `fsl_sub` command line tool, 
+- It is assumed that FSL is installed.
+- Job submission to a computing cluster is currently based on FSL's `fsl_sub` command line tool, 
 which assumes that the computing cluster is managed by SGE.
 
 ## Running the template construction pipeline