Commit 585f852d authored by Christoph Arthofer's avatar Christoph Arthofer
Browse files

README

parent 2a4a7ab6
......@@ -12,12 +12,13 @@ conda install -c conda-forge fslpy
pip install file-tree file-tree-fsl
```
The MMORF singularity package has to be downloaded and the path set:
- The MMORF singularity package has to be downloaded and the environment variable `MMORFDIR` set:
```bash
export MMORFDIR=/path/to/mmorf.sif
```
Job submission to a computing cluster is currently based on FSL's `fsl_sub` command line tool,
- It is assumed that FSL is installed.
- Job submission to a computing cluster is currently based on FSL's `fsl_sub` command line tool,
which assumes that the computing cluster is managed by SGE.
## Running the template construction pipeline
......
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