Commit 6f74a38d authored by Christoph Arthofer's avatar Christoph Arthofer
Browse files

update README

parent 1495e9df
......@@ -12,7 +12,8 @@ conda install -c conda-forge fslpy
pip install file-tree file-tree-fsl
```
- The MMORF singularity package has to be downloaded and the environment variable `MMORFDIR` set:
- The MMORF singularity package is required for the registrations. It can be downloaded from https://git.fmrib.ox.ac.uk/flange/mmorf_beta.
For the template construction pipeline to find MMORF the environment variable `MMORFDIR` has to be set:
```bash
export MMORFDIR=/path/to/mmorf.sif
```
......@@ -49,7 +50,7 @@ Required keys for T1: T1_head, T1_brain, T1_brain_mask
Required keys for T1+T2: T1_head, T1_brain, T1_brain_mask, T2_head, T2_brain
Required keys for T1+T2+DTI: T1_head, T1_brain, T1_brain_mask, T2_head, T2_brain, DTI_scalar, DTI_tensor
For example to construct a combined T1, T2 and DTI template `./tree/data.tree` would look like:
For example to construct a combined T1, T2 and DTI template `./tree/data.tree` could look like:
```bash
{sub_id}
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment