solved bug with inverse lesion mask

run_template_construction.py

@@ -852,7 +852,7 @@ if __name__ == "__main__":
                                      kwargs=None,
                                      clean="never")
                 jobcmd = jobcmd + '\n'
-                jobcmd = jobcmd + 'fslmaths ' + tree.get('data/lesion_mask_in_T1') + ' -bin ' + tree.get('inverse_lesion_mask_in_T1') + '\n'
+                jobcmd = jobcmd + 'fslmaths ' + tree.get('data/lesion_mask_in_T1') + ' -bin -mul -1 -add 1 ' + tree.get('inverse_lesion_mask_in_T1') + '\n'
                 f.write(jobcmd)
         job_ids[0] = submitJob(tag+'_'+task_name, log_dir, script=script_path, queue=cpuq)
         # job_ids[0] = submitJob(script_path, tag+'_'+task_name, log_dir, queue=cpuq, wait_for=None, array_task=True)