fslsub

run_template_construction.py

@@ -517,7 +517,7 @@ def submitJob(name, log_dir, queue, wait_for=[], script=None, command=None, copr
     if script is not None and os.path.exists(script):
         cmd += ' -t ' + script
     elif command is not None :
-        cmd += shlex.split(command)
+        cmd += ' "' + command + '"'
 
     # stream = os.popen(cmd)
     # job_id = stream.read()
@@ -525,7 +525,7 @@ def submitJob(name, log_dir, queue, wait_for=[], script=None, command=None, copr
     print(cmd)
 
     try:
-        result = subprocess.run(cmd, capture_output=True, text=True, check=True)
+        result = subprocess.run(shlex.split(cmd), capture_output=True, text=True, check=True)
     except subprocess.CalledProcessError as e:
         print(str(e), file=sys.stderr)
         return None