added lesion mask support

run_template_construction.py

@@ -477,7 +477,7 @@ def applyWarpWrapper(img_path, ref_path, warped_path, warp_path, interp='spline'
 #     return job_id
 
 
-def fslsubWrapper(name, log_dir, queue, wait_for=[], script=None, command=None, coprocessor_class=None,
+def submitJob(name, log_dir, queue, wait_for=[], script=None, command=None, coprocessor_class=None,
                   coprocessor=None, export_var=None, debug=False):
     """! Wrapper for fslsub - submits a job to the cluster. This function can be easily extended to work with other workload managers.