Commit 2cf82889 authored by Christoph Arthofer's avatar Christoph Arthofer
Browse files

Merge branch 'duplicateMasks' into 'master'

Removed duplicate mask files

See merge request !5
parents b7b3728f d53550a8
Pipeline #11341 passed with stages
in 56 seconds
File added
......@@ -33,8 +33,8 @@ Our general pipeline for template construction can be downloaded from https://gi
| `oxford-mm-1_DTI_tensor.nii.gz` | DTI volume
| `oxford-mm-1_T1_brain.nii.gz` | Brain-masked oxford-mm-0_T1_head
| `oxford-mm-1_DTI_mask.nii.gz` | Brain mask for DTI volume to reduce impact of noise around edges of brain (can be used as --mask_ref_tensor input to MMORF)
| `oxford-mm-1_T1_mask_average.nii.gz` | Average brain mask
| `oxford-mm-1_T1_mask_weighted.nii.gz` | Weighted brain mask for registrations with whole-head images only; reduces regularisation in the brain compared to skull and surrounding regions (can be used as --mask_ref_scalar input to MMORF)
| `oxford-mm-1_T1_brain_mask_average.nii.gz` | Average brain mask
| `oxford-mm-1_T1_brain_mask_weighted.nii.gz` | Weighted brain mask for registrations with whole-head images only; reduces regularisation in the brain compared to skull and surrounding regions (can be used as --mask_ref_scalar input to MMORF)
# Oxford-MM-0
......@@ -57,7 +57,7 @@ Our general pipeline for template construction can be downloaded from https://gi
| `oxford-mm-0_T1_brain.nii.gz` | Brain-masked oxford-mm-0_T1_head
| `oxford-mm-0_T1_brain_clamped.nii.gz` | Brain-masked oxford-mm-0_T1_head_clamped
| `oxford-mm-0_DTI_mask.nii.gz` | Brain mask for DTI volume to reduce impact of noise around edges of brain (can be used as --mask_ref_tensor input to MMORF)
| `oxford-mm-0_T1_mask_average.nii.gz` | Average brain mask
| `oxford-mm-0_T1_mask_weighted.nii.gz` | Weighted brain mask for registrations with whole-head images only; reduces regularisation in the brain compared to skull and surrounding regions (can be used as --mask_ref_scalar input to MMORF)
| `oxford-mm-0_T1_brain_mask_average.nii.gz` | Average brain mask
| `oxford-mm-0_T1_brain_mask_weighted.nii.gz` | Weighted brain mask for registrations with whole-head images only; reduces regularisation in the brain compared to skull and surrounding regions (can be used as --mask_ref_scalar input to MMORF)
Contact: christoph.arthofer@ndcn.ox.ac.uk
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