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Commit 09fe6e28 authored by Paul McCarthy's avatar Paul McCarthy
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Adjustments to tests.

parent 07bec037
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tests/test_fsl_utils_path.py
View file @ 09fe6e28
......@@ -327,7 +327,7 @@ def test_shallowest():
assert fslpath.shallowest(path, suffixes) == output
def test_removeDuplicates():
def test_removeDuplicates_shouldPass():
allowedExts = fslimage.ALLOWED_EXTENSIONS
groups = fslimage.FILE_GROUPS
......@@ -340,44 +340,58 @@ def test_removeDuplicates():
# ]
allTests = [
(['file.hdr', 'file.img'], [
(['file'], ['file']),
(['file.hdr'], ['file.hdr']),
(['file'], ['file.img']),
(['file', 'file'], ['file.img']),
(['file', 'file.hdr'], ['file.img']),
(['file', 'file.img'], ['file.img']),
(['file.hdr', 'file'], ['file.img']),
(['file.hdr', 'file.hdr'], ['file.img']),
(['file.hdr', 'file.img'], ['file.img']),
(['file.img', 'file'], ['file.img']),
(['file.img', 'file.hdr'], ['file.img']),
(['file.img', 'file.img'], ['file.img']),
(['file.hdr'], ['file.img']),
(['file.img'], ['file.img']),
(['file.hdr', 'file.img'], ['file.hdr']),
(['file.hdr', 'file.img'], ['file.img']),
(['file.img', 'file.hdr'], ['file.img']),
]),
(['file.hdr', 'file.img', 'file.blob'], [
(['file'], ['file']),
(['file.hdr'], ['file.hdr']),
(['file'], ['file.img']),
(['file.hdr'], ['file.img']),
(['file.img'], ['file.img']),
(['file.hdr', 'file.img'], ['file.hdr']),
(['file.hdr', 'file.img'], ['file.img']),
(['file.img', 'file.hdr'], ['file.img']),
]),
(['file.hdr', 'file.img', 'file.nii'], [
(['file'], ['file']),
(['file.hdr'], ['file.hdr']),
(['file.img'], ['file.img']),
(['file.hdr', 'file.img'], ['file.hdr']),
(['file.img', 'file.hdr'], ['file.img']),
(['file.hdr'], ['file.img']),
(['file.img'], ['file.img']),
(['file.hdr', 'file.nii'], ['file.img', 'file.nii']),
(['file.img', 'file.nii'], ['file.img', 'file.nii']),
(['file.hdr', 'file.img'], ['file.img']),
(['file.img', 'file.hdr'], ['file.img']),
(['file.img', 'file.hdr'], ['file.img']),
(['file.hdr', 'file.img', 'file.nii'], ['file.img', 'file.nii']),
(['file.img', 'file.hdr', 'file.nii'], ['file.img', 'file.nii']),
(['file.img', 'file.hdr', 'file.nii'], ['file.img', 'file.nii']),
]),
(['001.hdr', '001.img', '002.hdr', '002.img', '003.hdr', '003.img'], [
(['001', '002', '003'],
['001', '002', '003']),
(['001', '002', '003'],
['001.img', '002.img', '003.img']),
(['001.hdr', '002.hdr', '003.hdr'],
['001.hdr', '002.hdr', '003.hdr']),
['001.img', '002.img', '003.img']),
(['001.img', '002.img', '003.img'],
['001.img', '002.img', '003.img']),
(['001.hdr', '001.img', '002.hdr', '002.img', '003.img'],
['001.hdr', '002.hdr', '003.img']),
['001.img', '002.img', '003.img']),
(['001.hdr', '001.img', '002.hdr', '002.img', '003.hdr', '003.img'],
['001.hdr', '002.hdr', '003.hdr']),
['001.img', '002.img', '003.img']),
(['001.img', '001.hdr', '002.img', '002.hdr', '003.img', '003.hdr'],
['001.img', '002.img', '003.img']),
])
......@@ -392,10 +406,17 @@ def test_removeDuplicates():
f.write('{}\n'.format(fn))
for paths, expected in tests:
print()
print('files_to_create: ', files_to_create)
print('paths: ', paths)
print('expected: ', expected)
paths = [op.join(workdir, p) for p in paths]
result = fslpath.removeDuplicates(paths, allowedExts, groups)
print('result: ', result)
assert result == [op.join(workdir, e) for e in expected]
for f in files_to_create:
......@@ -405,6 +426,9 @@ def test_removeDuplicates():
shutil.rmtree(workdir)
def test_removeDuplicates_shouldFail():
pass
def test_getFileGroup():
......@@ -420,10 +444,12 @@ def test_getFileGroup():
# expected == 'all' is equivalent to expected == files_to_create
allTests = [
(['file.hdr', 'file.img'], [
('file', 'all'),
('file.hdr', 'all'),
('file.img', 'all')]),
(['file.hdr.gz', 'file.img.gz'], [
('file', 'all'),
('file.hdr.gz', 'all'),
('file.img.gz', 'all')]),
......@@ -437,10 +463,12 @@ def test_getFileGroup():
(['file.hdr'], [
('file', ['file']),
('file.hdr', ['file.hdr']),
('file.img', ['file.img'])]),
(['file.img'], [
('file', ['file']),
('file.hdr', ['file.hdr']),
('file.img', ['file.img'])]),
]
......@@ -459,6 +487,10 @@ def test_getFileGroup():
if expected == 'all':
expected = list(files_to_create)
print()
print('files_to_create: ', files_to_create)
print('path: ', path)
print('expected: ', expected)
fullPaths = fslpath.getFileGroup(
op.join(workdir, path),
......@@ -480,207 +512,3 @@ def test_getFileGroup():
finally:
shutil.rmtree(workdir)
def test_imcp_shouldPass(move=False):
allowedExts = fslimage.ALLOWED_EXTENSIONS
groups = fslimage.FILE_GROUPS
#
# (files_to_create,
# [( imcp_src, imcp_dest, files_which_should_exist),
# ( imcp_src, imcp_dest, [files_which_should_exist]),
# ([imcp_srcs], imcp_dest, files_which_should_exist),
# ([imcp_srcs], imcp_dest, [files_which_should_exist]),
# ...
# ]
# )
#
# if icmp_dest == '', it means to copy to the directory
# files_which_should_exist == 'all' is equivalent to files_which_should_exist == files_to_create
shouldPass = [
(['file.hdr', 'file.img'], [
('file', 'file', 'all'),
('file', 'file.img', 'all'),
('file', 'file.hdr', 'all'),
('file', '', 'all'),
('file.img', 'file', 'all'),
('file.img', 'file.img', 'all'),
('file.img', 'file.hdr', 'all'),
('file.img', '', 'all'),
('file.hdr', 'file', 'all'),
('file.hdr', 'file.img', 'all'),
('file.hdr', 'file.hdr', 'all'),
('file.hdr', '', 'all'),
]),
(['file.hdr', 'file.img', 'file.blob'], [
('file', 'file', ['file.hdr', 'file.img']),
('file', 'file.img', ['file.hdr', 'file.img']),
('file', 'file.hdr', ['file.hdr', 'file.img']),
('file', '', ['file.hdr', 'file.img']),
('file.img', 'file', ['file.hdr', 'file.img']),
('file.img', 'file.img', ['file.hdr', 'file.img']),
('file.img', 'file.hdr', ['file.hdr', 'file.img']),
('file.img', '', ['file.hdr', 'file.img']),
('file.hdr', 'file', ['file.hdr', 'file.img']),
('file.hdr', 'file.img', ['file.hdr', 'file.img']),
('file.hdr', 'file.hdr', ['file.hdr', 'file.img']),
('file.hdr', '', ['file.hdr', 'file.img']),
]),
(['file.hdr', 'file.img', 'file.nii'], [
('file.img', 'file', ['file.hdr', 'file.img']),
('file.img', 'file.img', ['file.hdr', 'file.img']),
('file.img', 'file.hdr', ['file.hdr', 'file.img']),
('file.img', '', ['file.hdr', 'file.img']),
('file.hdr', 'file', ['file.hdr', 'file.img']),
('file.hdr', 'file.img', ['file.hdr', 'file.img']),
('file.hdr', 'file.hdr', ['file.hdr', 'file.img']),
('file.hdr', '', ['file.hdr', 'file.img']),
('file.nii', 'file', 'file.nii'),
('file.nii', 'file.nii', 'file.nii'),
('file.nii', '', 'file.nii'),
]),
(['file.nii'], [
('file', 'file', 'all'),
('file', 'file.nii', 'all'),
('file', '', 'all'),
('file.nii', 'file', 'all'),
('file.nii', 'file.nii', 'all'),
('file.nii', '', 'all'),
]),
(['file.nii.gz'], [
('file', 'file', 'all'),
('file', 'file.nii.gz', 'all'),
('file', '', 'all'),
('file.nii.gz', 'file', 'all'),
('file.nii.gz', 'file.nii.gz', 'all'),
('file.nii.gz', '', 'all'),
]),
(['file.nii', 'file.blob'], [
('file', 'file', 'file.nii'),
('file', 'file.nii', 'file.nii'),
('file', '', 'file.nii'),
('file.nii', 'file', 'file.nii'),
('file.nii', 'file.nii', 'file.nii'),
('file.nii', '', 'file.nii'),
]),
(['file.nii', 'file.nii.gz'], [
('file.nii', 'file', 'file.nii'),
('file.nii', 'file.nii', 'file.nii'),
('file.nii', '', 'file.nii'),
('file.nii.gz', 'file', 'file.nii.gz'),
('file.nii.gz', 'file.nii.gz', 'file.nii.gz'),
('file.nii.gz', '', 'file.nii.gz'),
]),
(['file.hdr', 'file.img', 'file.nii', 'file.nii.gz'], [
(['file.img', 'file.nii', 'file.nii.gz'], '', 'all'),
('file.img', '', ['file.hdr', 'file.img']),
(['file.hdr', 'file.img'], '', ['file.hdr', 'file.img']),
('file.nii', '', 'file.nii'),
(['file.nii', 'file.nii.gz'], '', ['file.nii', 'file.nii.gz']),
]),
(['001.hdr', '001.img', '002.hdr', '002.img', '003.hdr', '003.img'], [
(['001', '002', '003'], '', 'all'),
(['001.img', '002.img', '003.img'], '', 'all'),
(['001.hdr', '002.hdr', '003.hdr'], '', 'all'),
(['001.img', '002', '003'], '', 'all'),
(['001.hdr', '002', '003'], '', 'all'),
(['001.img', '002.hdr', '003.img'], '', 'all'),
(['001.hdr', '002.img', '003.hdr'], '', 'all'),
(['001', '003'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.img', '003.img'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.hdr', '003.hdr'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.img', '003'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.hdr', '003'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.img', '003.img'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.hdr', '003.hdr'], '', ['001.hdr', '001.img', '003.hdr', '003.img']),
(['001.img', '001.hdr', '002.img', '002.hdr', '003.img', '003.hdr'], '', 'all'),
]),
]
indir = tempfile.mkdtemp()
outdir = tempfile.mkdtemp()
try:
for files_to_create, tests in shouldPass:
if not isinstance(files_to_create, list):
files_to_create = [files_to_create]
for imcp_src, imcp_dest, should_exist in tests:
if not isinstance(imcp_src, list): imcp_src = [imcp_src]
if should_exist == 'all': should_exist = list(files_to_create)
elif not isinstance(should_exist, list): should_exist = [should_exist]
imcp_dest = op.join(outdir, imcp_dest)
# Each input file contains
# its name in plain text,
# so we can verify that the
# files were correctly copied
for fn in files_to_create:
with open(op.join(indir, fn), 'wt') as f:
f.write('{}\n'.format(fn))
for src in imcp_src:
src = op.join(indir, src)
if move: fslpath.immv(src, imcp_dest, allowedExts=allowedExts, fileGroups=groups, overwrite=True)
else: fslpath.imcp(src, imcp_dest, allowedExts=allowedExts, fileGroups=groups, overwrite=True)
copied = os.listdir(outdir)
copied = [f for f in copied if op.isfile(op.join(outdir, f))]
assert sorted(copied) == sorted(should_exist)
# check file contents
for fn in should_exist:
with open(op.join(outdir, fn), 'rt') as f:
assert f.read() == '{}\n'.format(fn)
# If move, check that
# input files are gone
if move:
for f in should_exist:
assert not op.exists(op.join(indir, f))
for f in files_to_create:
try: os.remove(op.join(indir, f))
except: pass
for f in should_exist:
os.remove(op.join(outdir, f))
finally:
shutil.rmtree(indir)
shutil.rmtree(outdir)
def test_immv_shouldPass():
test_imcp_shouldPass(move=True)
tests/test_immv_imcp.py 0 → 100644
View file @ 09fe6e28
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