Commit 114bf373 authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

DOC: fixes

parent 4b2fae25
......@@ -314,6 +314,7 @@ def relatedFiles(fname, ftypes=None):
This function assumes that the GIFTI files are named according to a
standard convention - the following conventions are supported:
- HCP-style, i.e.: ``<subject>.<hemi>.<type>.<space>.<ftype>.gii``
- BIDS-style, i.e.:
......@@ -1005,7 +1005,7 @@ class Image(Nifti):
:arg image: A string containing the name of an image file to load,
or a :mod:`numpy` array, or a :mod:`nibabel` image
object, or an ``Image``object.
object, or an ``Image`` object.
:arg name: A name for the image.
......@@ -63,7 +63,7 @@ class SubmitParams(object):
Any command line script can be submitted by the parameters by calling the `SubmitParams` object:
.. codeblock:: python
.. code-block:: python
submit = SubmitParams(minutes=1, logdir='log', wait_for=['108023', '108019'])
submit('echo finished')
......@@ -71,14 +71,14 @@ class SubmitParams(object):
This will run "echo finished" with a maximum runtime of 1 minute after the jobs with IDs 108023 and 108019 are finished.
It is the equivalent of
.. codeblock:: bash
.. code-block:: bash
fsl_sub -T 1 -l log -j 108023,108019 "echo finished"
For python scripts that submit themselves to the cluster, it might be useful to give the user some control
over at least some of the submission parameters. This can be done using:
.. codeblock:: python
.. code-block:: python
import argparse
parser = argparse.ArgumentParser("my script doing awesome stuff")
......@@ -606,6 +606,7 @@ class FileOrThing(object):
:arg load: Function which is called to load items for arguments
that were set to :data:`LOAD`. Must accept the
following arguments:
- the name of the argument
- path to the file to be loaded
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