From 1587e85a1f53d3738038eea39ddfe22c4b799b32 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Wed, 24 Jul 2019 11:53:08 +0100
Subject: [PATCH] RF: Tweaks to x5 scripts
---
fsl/scripts/fsl_apply_x5.py | 6 +++---
fsl/scripts/fsl_convert_x5.py | 24 +++++++++++++++++-------
2 files changed, 20 insertions(+), 10 deletions(-)
diff --git a/fsl/scripts/fsl_apply_x5.py b/fsl/scripts/fsl_apply_x5.py
index 6eccd348d..0981d9608 100644
--- a/fsl/scripts/fsl_apply_x5.py
+++ b/fsl/scripts/fsl_apply_x5.py
@@ -129,9 +129,9 @@ def main(args=None):
args = sys.argv[1:]
print()
- print('Warning: this version of fsl_apply_x5 is a development release. '
- 'Interface, behaviour, and input/output formats of future versions '
- 'may differ from this version.')
+ print('Warning: this version of fsl_apply_x5 is a development release.\n'
+ 'Interface, behaviour, and input/output formats of future versions\n'
+ 'may differ substantially from this version.')
print()
args = parseArgs(args)
diff --git a/fsl/scripts/fsl_convert_x5.py b/fsl/scripts/fsl_convert_x5.py
index 13a279456..d70b78d67 100644
--- a/fsl/scripts/fsl_convert_x5.py
+++ b/fsl/scripts/fsl_convert_x5.py
@@ -11,6 +11,7 @@ transformation file formats.
import os.path as op
import functools as ft
+import textwrap as tw
import sys
import shutil
import logging
@@ -46,10 +47,15 @@ def parseArgs(args):
'name.',
}
+ epilog = tw.dedent("""
+ If the input and output file formats are the same, the input file
+ is simply copied to the output file.
+ """).strip()
+
parser = argparse.ArgumentParser('fsl_convert_x5')
subparsers = parser.add_subparsers(dest='ctype')
- flirt = subparsers.add_parser('flirt')
- fnirt = subparsers.add_parser('fnirt')
+ flirt = subparsers.add_parser('flirt', epilog=epilog)
+ fnirt = subparsers.add_parser('fnirt', epilog=epilog)
imgtype = ft.partial(parse_data.Image, loadData=False)
flirt.add_argument('input', help=helps['input'])
@@ -79,8 +85,12 @@ def parseArgs(args):
sys.exit(0)
if len(args) == 1:
- if args[0] == 'flirt': flirt.print_help()
- elif args[0] == 'fnirt': fnirt.print_help()
+ if args[0] == 'flirt':
+ flirt.print_help()
+ sys.exit(0)
+ elif args[0] == 'fnirt':
+ fnirt.print_help()
+ sys.exit(0)
args = parser.parse_args(args)
@@ -187,9 +197,9 @@ def main(args=None):
args = sys.argv[1:]
print()
- print('Warning: this version of fsl_convert_x5 is a development release. '
- 'Interface, behaviour, and input/output formats of future versions '
- 'may differ from this version.')
+ print('Warning: this version of fsl_convert_x5 is a development release.\n'
+ 'Interface, behaviour, and input/output formats of future versions\n'
+ 'may differ substantially from this version.')
print()
args = parseArgs(args)
--
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