diff --git a/fsl/scripts/fsl_convert_x5.py b/fsl/scripts/fsl_convert_x5.py index 8b6f3db341fcd4c45f8fdff0c1c47ea12470962b..33f063c159b9d13aef3f5da92a235e96d517489b 100644 --- a/fsl/scripts/fsl_convert_x5.py +++ b/fsl/scripts/fsl_convert_x5.py @@ -130,6 +130,7 @@ def fnirtToX5(args): src = fslimage.Image(args.source, loadData=False) ref = fslimage.Image(args.reference, loadData=False) field = fnirt.readFnirt(args.input, src=src, ref=ref) + field = fnirt.fromFnirt(field, 'world', 'world') x5.writeNonLinearX5(args.output, field)