From 54f07a2672f1c429ab705d86ebd56275265fc361 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 19 Jul 2019 16:19:17 +0100
Subject: [PATCH] RF: Update convert_x5 script
---
fsl/scripts/fsl_convert_x5.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/fsl/scripts/fsl_convert_x5.py b/fsl/scripts/fsl_convert_x5.py
index 8b6f3db34..33f063c15 100644
--- a/fsl/scripts/fsl_convert_x5.py
+++ b/fsl/scripts/fsl_convert_x5.py
@@ -130,6 +130,7 @@ def fnirtToX5(args):
src = fslimage.Image(args.source, loadData=False)
ref = fslimage.Image(args.reference, loadData=False)
field = fnirt.readFnirt(args.input, src=src, ref=ref)
+ field = fnirt.fromFnirt(field, 'world', 'world')
x5.writeNonLinearX5(args.output, field)
--
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