Commit 806e5dcd authored by Michiel Cottaar's avatar Michiel Cottaar
Browse files

REF: recalled _prepareArgs as prepareArgs

parent fac47610
......@@ -104,7 +104,7 @@ def submit(*command,
:return: string of submitted job id
"""
from fsl.utils.run import runfsl, _prepareArgs
from fsl.utils.run import runfsl, prepareArgs
base_cmd = ['fsl_sub']
......@@ -135,7 +135,7 @@ def submit(*command,
base_cmd.append('-s')
base_cmd.extend(multi_threaded)
base_cmd.extend(_prepareArgs(command))
base_cmd.extend(prepareArgs(command))
return runfsl(*base_cmd).strip()
......
......@@ -72,7 +72,7 @@ def dryrun(*args):
DRY_RUN = oldval
def _prepareArgs(args):
def prepareArgs(args):
"""Used by the :func:`run` function. Ensures that the given arguments is a
list of strings.
"""
......@@ -179,7 +179,7 @@ def run(*args, **kwargs):
logStdout = log .get('stdout', None)
logStderr = log .get('stderr', None)
logCmd = log .get('cmd', None)
args = _prepareArgs(args)
args = prepareArgs(args)
if not bool(submit):
submit = None
......@@ -345,7 +345,7 @@ def runfsl(*args, **kwargs):
if not prefixes:
raise FSLNotPresent('$FSLDIR is not set - FSL cannot be found!')
args = _prepareArgs(args)
args = prepareArgs(args)
for prefix in prefixes:
cmdpath = op.join(prefix, args[0])
if op.isfile(cmdpath):
......
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