From 94f3ebf00a077ee22d6a94cb1660e814ccfeef49 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Sun, 14 Jul 2019 13:42:08 +0100
Subject: [PATCH] BF: Small fixes
---
fsl/transform/x5.py | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/fsl/transform/x5.py b/fsl/transform/x5.py
index ca32f0965..a1e533e85 100644
--- a/fsl/transform/x5.py
+++ b/fsl/transform/x5.py
@@ -637,14 +637,15 @@ def _readDisplacementField(group):
src, ref, pre, post, init, srcSpace, refSpace = _readNonLinearCommon(group)
field = np.array(group['Transform'])
- dtype = group['Representation']
+ dtype = group.attrs['Representation']
field = nonlinear.DisplacementField(field,
src=src,
ref=ref,
srcSpace=srcSpace,
refSpace=refSpace,
dispType=dtype,
- srcToRefMat=init)
+ srcToRefMat=init,
+ xform=ref.voxToWorldMat)
return field
@@ -660,7 +661,7 @@ def _writeDisplacementField(group, field):
group.attrs['SubType'] = 'displacement'
group.attrs['Representation'] = field.displacementType
- xform = np.field.data.astype(np.float64)
+ xform = field.data.astype(np.float64)
group.create_dataset('Transform', data=xform)
--
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