diff --git a/fsl/utils/image/__init__.py b/fsl/utils/image/__init__.py index 36bde925ddd642203560caf5ac58ff99a364d386..54dde4b2a7c40e1c97f8b7fcfaa4f86d1b5781b5 100644 --- a/fsl/utils/image/__init__.py +++ b/fsl/utils/image/__init__.py @@ -13,4 +13,5 @@ The following modules are available: :nosignature .image.resample + .image.roi """ diff --git a/fsl/utils/image/roi.py b/fsl/utils/image/roi.py index 84aee2434a30a6d16d19c3729466ca10845c4185..0b26d79d82fd93c3f2920da30b79a73ef4cb981f 100644 --- a/fsl/utils/image/roi.py +++ b/fsl/utils/image/roi.py @@ -11,8 +11,8 @@ a region-of-interest from, or expand the field-of-view of, an :class:`.Image`. import numpy as np -import fsl.data.image as fslimage -import fsl.utils.transform as transform +import fsl.data.image as fslimage +import fsl.transform.affine as affine def _normaliseBounds(shape, bounds): @@ -97,8 +97,8 @@ def roi(image, bounds): # each spatial dimension oldaff = image.voxToWorldMat offset = [lo for lo, hi in bounds[:3]] - offset = transform.scaleOffsetXform([1, 1, 1], offset) - newaff = transform.concat(oldaff, offset) + offset = affine.scaleOffsetXform([1, 1, 1], offset) + newaff = affine.concat(oldaff, offset) return fslimage.Image(newdata, xform=newaff, diff --git a/fsl/utils/transform.py b/fsl/utils/transform.py index e682cc1be1a63e8f8f90fc7394bb006c48c5472c..b3d51afb21f0e5a5a861458d4fde9e2e62daebc2 100644 --- a/fsl/utils/transform.py +++ b/fsl/utils/transform.py @@ -16,6 +16,6 @@ from fsl.transform.flirt import (flirtMatrixToSform, # noqa deprecated.warn('fsl.utils.transform', - vin='2.2.0', + vin='2.4.0', rin='3.0.0', msg='Use the fsl.transform module instead')