From cdffa43964c4628843564e7b73b5f6e982610fc1 Mon Sep 17 00:00:00 2001
From: Michiel Cottaar <MichielCottaar@protonmail.com>
Date: Mon, 17 Aug 2020 16:54:30 +0200
Subject: [PATCH] updated raw BIDS tree
---
fsl/utils/filetree/trees/bids_raw.tree | 31 +++++++++++++++++++-------
1 file changed, 23 insertions(+), 8 deletions(-)
diff --git a/fsl/utils/filetree/trees/bids_raw.tree b/fsl/utils/filetree/trees/bids_raw.tree
index d07f19004..0782e7d20 100644
--- a/fsl/utils/filetree/trees/bids_raw.tree
+++ b/fsl/utils/filetree/trees/bids_raw.tree
@@ -2,19 +2,22 @@ ext=.nii.gz
dataset_description.json
participants.tsv
-README
-CHANGES
+README (readme)
+CHANGES (changes)
+LICENSE (license)
+genetic_info.json
sub-{participant}
[ses-{session}]
sub-{participant}_sessions.tsv (sessions_tsv)
anat (anat_dir)
- sub-{participant}[_ses-{session}][_acq-{acq}][_rec-{rec}][_run-{run_index}]_{modality}{ext} (anat_image)
+ sub-{participant}[_ses-{session}][_acq-{acq}][_ce-{ce}][_rec-{rec}][_run-{run_index}]_{modality}{ext} (anat_image)
+ sub-{participant}[_ses-{session}][_acq-{acq}][_ce-{ce}][_rec-{rec}][_run-{run_index}][_mod-{modality}]_defacemask{ext} (anat_deface)
func (func_dir)
- sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_rec-{rec}][_run-{run_index}]_bold{ext} (task_image)
- sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_rec-{rec}][_run-{run_index}]_sbref{ext} (task_sbref)
- sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_rec-{rec}][_run-{run_index}]_events.tsv (task_events)
- sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_rec-{rec}][_run-{run_index}][_recording-{recording}]_physio{ext} (task_physio)
- sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_rec-{rec}][_run-{run_index}][_recording-{recording}]_stim{ext} (task_stim)
+ sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_ce-{ce}][_dir-{dir}][_rec-{rec}][_run-{run_index}][_echo-<index>]_bold{ext} (task_image)
+ sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_ce-{ce}][_dir-{dir}][_rec-{rec}][_run-{run_index}][_echo-<index>]_sbref{ext} (task_sbref)
+ sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_ce-{ce}][_dir-{dir}][_rec-{rec}][_run-{run_index}][_echo-<index>]_events.tsv (task_events)
+ sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_ce-{ce}][_dir-{dir}][_rec-{rec}][_run-{run_index}][_echo-<index>][_recording-{recording}]_physio.tsv.gz (task_physio)
+ sub-{participant}[_ses-{session}]_task-{task}[_acq-{acq}][_ce-{ce}][_dir-{dir}][_rec-{rec}][_run-{run_index}][_echo-<index>][_recording-{recording}]_stim.tsv.gz (task_stim)
dwi (dwi_dir)
sub-{participant}[_ses-{session}][_acq-{acq}][_run-{run_index}]_dwi{ext} (dwi_image)
sub-{participant}[_ses-{session}][_acq-{acq}][_run-{run_index}]_dwi.bval (bval)
@@ -28,3 +31,15 @@ sub-{participant}
sub-{participant}[_ses-{session}][_acq-{acq}][_run-{run_index}]_phase2{ext} (fmap_phase2)
sub-{participant}[_ses-{session}][_acq-{acq}][_run-{run_index}]_fieldmap{ext} (fmap)
sub-{participant}[_ses-{session}][_acq-{acq}]_dir-{dir}[_run-{run_index}]_epi{ext} (fmap_epi)
+ meg (meg_dir)
+ sub-{participant}[_ses-{session}]_task-{task}[_run-{run}][_proc-{proc}]_meg.{meg_ext} (meg)
+ eeg (eeg_dir)
+ sub-{participant}[_ses-{session}]_task-{task}[_run-{run}][_proc-{proc}]_eeg.{eeg_ext} (eeg)
+ ieeg (ieeg_dir)
+ sub-{participant}[_ses-{session}]_task-{task}[_run-{run}][_proc-{proc}]_ieeg.{ieeg_ext} (ieeg)
+ beh (behavioral_dir)
+ sub-{participant}[_ses-{session}]_task-{task}_events.tsv (behavioural_events)
+ sub-{participant}[_ses-{session}]_task-{task}_beh.tsv (behavioural)
+ sub-{participant}[_ses-{session}]_task-{task}_physio.tsv.gz (behavioural_physio)
+ sub-{participant}[_ses-{session}]_task-{task}_stim.tsv.gz (behavioral_stim)
+
--
GitLab