Explore projects

Talks, practicals, and other materials for the 2020 WIN PyTreat

Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

This repository contains processing code and result files associated with the following publication: Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

a place for general things that I'd like to share with people (tutorials etc)

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Repository for code and materials from 'Reassessing associations between white matter and behaviour with multimodal microstructural imaging' by Lazari et al.