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Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FSL documentation

WMH and lesion segmentation tool

Multi-MOdal Registration Framework

Monte Carlo MR microstructure and sequence simulator

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

FSL release management infrastructure

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis