GitLab

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

The FMRIB UK BioBank data processing library. ukbparse is no longer being developed - it has been superseded by funpack - https://git.fmrib.ox.ac.uk/fsl/funpack/

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.

Scripts for QSM processing of the UK Biobank swMRI data

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation

Triplanar U-Net ensemble network (TrUE-Net) model for WMh segmentation

My first python package, random utilities

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.