GitLab

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.

Scripts for QSM processing of the UK Biobank swMRI data

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation

Triplanar U-Net ensemble network (TrUE-Net) model for WMh segmentation

My first python package, random utilities

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Task, analysis, and figures for the temporal scaling project.

strokeseg is a python package + command line program to identify stroke in clinical brain images.

Repository for spec2nii test data.