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Fidel Alfaro Almagro
UK_biobank_pipeline_v_1.5
Commits
b3a406bd
Commit
b3a406bd
authored
Sep 18, 2021
by
Fidel Alfaro Almagro
Browse files
Update bb_eddy_wrap_gpu to use eddy_cuda9.0
parent
e84247ef
Changes
1
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bb_diffusion_pipeline/bb_eddy/bb_eddy_wrap_gpu
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b3a406bd
...
...
@@ -5,7 +5,7 @@
baseDir
=
$1
bestInd
=
`
cat
$baseDir
/fieldmap/total_B0_AP_best_index.txt
`
$FSLDIR
/bin/eddy_cuda
8
.0_test
\
$FSLDIR
/bin/eddy_cuda
9
.0_test
\
--imain
=
$baseDir
/dMRI/dMRI/AP.nii.gz
\
--mask
=
$baseDir
/dMRI/dMRI/nodif_brain_mask.nii.gz
\
--topup
=
$baseDir
/fieldmap/fieldmap_out
\
...
...
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