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Commit e1359e17 authored by Fidel Alfaro Almagro's avatar Fidel Alfaro Almagro
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Update bb_pipeline_FS_queue.py

parent f326f874
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bb_FS_pipeline/bb_pipeline_FS_queue.py
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......@@ -42,9 +42,9 @@ def bb_pipeline_FS(subject, jobHold, fileConfiguration, queue):
return -1
else:
jobFS01 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + long_queues + ' -N "bb_FS_run_' + subject + '" -l ' + logDir + ' -j ' + jobHold + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_run ' + subject )
jobFS02 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + short_queues + ' -N "bb_FS_segm_' + subject + '" -l ' + logDir + ' -j ' + jobFS01 + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_segm ' + subject )
jobFS03 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + short_queues + ' -N "bb_FS_IDPs_' + subject + '" -l ' + logDir + ' -j ' + jobFS02 + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_get_IDPs.py ' + subject )
jobFS01 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + long_queues + ' -N "bb_FS_run_' + subject + '" -l ' + logDir + ' -j ' + str(jobHold) + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_run ' + subject )
jobFS02 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + short_queues + ' -N "bb_FS_segm_' + subject + '" -l ' + logDir + ' -j ' + jobFS01 + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_segm ' + subject )
jobFS03 = LT.runCommand(logger, '${FSLDIR}/bin/fsl_sub -q ' + short_queues + ' -N "bb_FS_IDPs_' + subject + '" -l ' + logDir + ' -j ' + jobFS02 + ' $BB_BIN_DIR/bb_FS_pipeline/bb_FS_get_IDPs.py ' + subject )
LT.finishLogging(logger)
return jobFS03
......
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