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Fidel Alfaro Almagro
UK_biobank_pipeline_v_1.5
Commits
ebc8a8d8
Commit
ebc8a8d8
authored
Sep 10, 2021
by
Fidel Alfaro Almagro
Browse files
Remove replicated call to ASL functionality
parent
f9f5c573
Changes
1
Hide whitespace changes
Inline
Side-by-side
bb_structural_pipeline/bb_pipeline_struct_queue.py
View file @
ebc8a8d8
...
...
@@ -74,10 +74,5 @@ def bb_pipeline_struct(subject, runTopup, fileConfiguration, queue, coeff):
return
","
.
join
([
jobSTRUCTINIT
,
jobSWI
])
else
:
jobPOSTTOPUP
=
LT
.
runCommand
(
logger
,
'${FSLDIR}/bin/fsl_sub -q '
+
long_queues
+
' -N "bb_post_topup_'
+
subject
+
'" -l '
+
logDir
+
' -j '
+
jobTOPUP
+
','
+
jobSTRUCTINIT
+
','
+
jobSWI
+
' $BB_BIN_DIR/bb_structural_pipeline/bb_post_topup '
+
subject
+
' '
+
coeff
)
if
'ASL'
in
fileConfiguration
:
jobASL
=
LT
.
runCommand
(
logger
,
'${FSLDIR}/bin/fsl_sub -q '
+
long_queues
+
' -N "bb_ASL_'
+
subject
+
'" -l '
+
logDir
+
' -j '
+
jobPOSTTOPUP
+
' $BB_BIN_DIR/bb_structural_pipeline/bb_asl '
+
subject
+
' '
+
coeff
)
return
jobASL
else
:
return
jobPOSTTOPUP
return
jobPOSTTOPUP
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