diff --git a/fslanimate b/fslanimate index 611e134668aa0c5ede34c17da1026d64cd023853..b36df4e696589395882966179a2d1551cd764a05 100755 --- a/fslanimate +++ b/fslanimate @@ -54,7 +54,7 @@ cd $tmpdir $FSLDIR/bin/fslsplit $im for fnm in `$FSLDIR/bin/imglob vol*` ; do - num=`$FSLDIR/bin/remove_ext $fnm | sed 's/vol//'`; export num; + num=`echo $fnm | sed 's/vol//'`; export num; echo $num; $FSLDIR/bin/slicer $fnm -s 2 -a ${iout}_$num.png ${FSLDIR}/bin/pngappend ${iout}_$num.png ${iout}_$num.gif