From 6ed1dff606f4b2d92b59851531dd75782cd03cba Mon Sep 17 00:00:00 2001
From: Taylor Hanayik <hanayik@gmail.com>
Date: Mon, 26 Jun 2023 15:23:28 +0100
Subject: [PATCH] add json tests; code cleanup;
---
fslstats.cc | 2 -
tests/fslstats/feedsRun | 113 ++++++++++++++----
tests/fslstats/test_cogMM_c.json | 15 +++
tests/fslstats/test_cogVox_C.json | 15 +++
.../test_diff_d_imageForDiff.nii.gz_m.json | 11 ++
tests/fslstats/test_entropyNonzero_E.json | 11 ++
tests/fslstats/test_entropy_e.json | 11 ++
tests/fslstats/test_histLimits_H_10_0_1.json | 22 ++++
tests/fslstats/test_hist_h_10.json | 22 ++++
tests/fslstats/test_maxCoord_x.json | 15 +++
tests/fslstats/test_meanHistCog_m_h_10_c.json | 28 +++++
tests/fslstats/test_meanHist_m_h_10.json | 23 ++++
tests/fslstats/test_meanNonzero_M.json | 11 ++
tests/fslstats/test_mean_m.json | 11 ++
tests/fslstats/test_mean_m_a.json | 11 ++
tests/fslstats/test_mean_m_a_n.json | 11 ++
tests/fslstats/test_minCoord_X.json | 15 +++
tests/fslstats/test_notRobust_R.json | 14 +++
.../fslstats/test_percentileNonzero_P_50.json | 11 ++
tests/fslstats/test_percentile_p_50.json | 11 ++
...st_preopIndexMaskMeanTimeSeries_t_K_m.json | 36 ++++++
.../fslstats/test_preopIndexMaskMean_K_m.json | 20 ++++
.../test_preopMeanTimeSeries_t_m.json | 18 +++
tests/fslstats/test_robust_r.json | 14 +++
tests/fslstats/test_roi_w.json | 20 ++++
tests/fslstats/test_stdevNonzero_S.json | 11 ++
tests/fslstats/test_stdev_s.json | 11 ++
.../test_threshold_l_0.25_u_0.75_m.json | 11 ++
tests/fslstats/test_volumeNonzero_V.json | 14 +++
tests/fslstats/test_volume_v.json | 14 +++
30 files changed, 525 insertions(+), 27 deletions(-)
create mode 100644 tests/fslstats/test_cogMM_c.json
create mode 100644 tests/fslstats/test_cogVox_C.json
create mode 100644 tests/fslstats/test_diff_d_imageForDiff.nii.gz_m.json
create mode 100644 tests/fslstats/test_entropyNonzero_E.json
create mode 100644 tests/fslstats/test_entropy_e.json
create mode 100644 tests/fslstats/test_histLimits_H_10_0_1.json
create mode 100644 tests/fslstats/test_hist_h_10.json
create mode 100644 tests/fslstats/test_maxCoord_x.json
create mode 100644 tests/fslstats/test_meanHistCog_m_h_10_c.json
create mode 100644 tests/fslstats/test_meanHist_m_h_10.json
create mode 100644 tests/fslstats/test_meanNonzero_M.json
create mode 100644 tests/fslstats/test_mean_m.json
create mode 100644 tests/fslstats/test_mean_m_a.json
create mode 100644 tests/fslstats/test_mean_m_a_n.json
create mode 100644 tests/fslstats/test_minCoord_X.json
create mode 100644 tests/fslstats/test_notRobust_R.json
create mode 100644 tests/fslstats/test_percentileNonzero_P_50.json
create mode 100644 tests/fslstats/test_percentile_p_50.json
create mode 100644 tests/fslstats/test_preopIndexMaskMeanTimeSeries_t_K_m.json
create mode 100644 tests/fslstats/test_preopIndexMaskMean_K_m.json
create mode 100644 tests/fslstats/test_preopMeanTimeSeries_t_m.json
create mode 100644 tests/fslstats/test_robust_r.json
create mode 100644 tests/fslstats/test_roi_w.json
create mode 100644 tests/fslstats/test_stdevNonzero_S.json
create mode 100644 tests/fslstats/test_stdev_s.json
create mode 100644 tests/fslstats/test_threshold_l_0.25_u_0.75_m.json
create mode 100644 tests/fslstats/test_volumeNonzero_V.json
create mode 100644 tests/fslstats/test_volume_v.json
diff --git a/fslstats.cc b/fslstats.cc
index 8e90fd2..b29d9f9 100644
--- a/fslstats.cc
+++ b/fslstats.cc
@@ -199,11 +199,9 @@ int fmrib_main_float(int argc, char *argv[], const bool timeseriesMode, const st
generateNonZeroMask(mask, masknz, vol);
}
int narg(2);
- bool last = false;
while (narg < argc)
{
- last = !(narg < argc - 1);
string sarg(argv[narg]);
if (sarg == "-n")
{
diff --git a/tests/fslstats/feedsRun b/tests/fslstats/feedsRun
index a007f1d..8e722db 100755
--- a/tests/fslstats/feedsRun
+++ b/tests/fslstats/feedsRun
@@ -46,31 +46,31 @@ import nibabel as nib
np.random.seed(0)
options = [
- {"option": "-r", "expected": "0.018533 0.978824"},
- {"option": "-R", "expected": "0.000546 0.999809"},
- {"option": "-e", "expected": "0.906103"},
- {"option": "-E", "expected": "0.906103"},
- {"option": "-v", "expected": "1000 1000.000000"},
- {"option": "-V", "expected": "1000 1000.000000"},
- {"option": "-m", "expected": "0.495922"},
- {"option": "-m -a", "expected": "0.495922"},
- {"option": "-m -a -n", "expected": "0.495922"},
- {"option": "-M", "expected": "0.495922"},
- {"option": "-s", "expected": "0.290744"},
- {"option": "-S", "expected": "0.290744"},
- {"option": "-w", "expected": "0 10 0 10 0 10 0 1"},
- {"option": "-x", "expected": "9 7 4"},
- {"option": "-X", "expected": "8 2 1"},
- {"option": "-c", "expected": "4.498706 4.545873 4.613188"},
- {"option": "-C", "expected": "4.498706 4.545873 4.613188"},
- {"option": "-p 50", "expected": "0.482584"},
- {"option": "-P 50", "expected": "0.482584"},
- {"option": "-m -h 10 -c", "expected": "0.495922 101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000 \n 4.498706 4.545873 4.613188"},
- {"option": "-m -h 10", "expected": "0.495922 101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
- {"option": "-h 10", "expected": "101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
- {"option": "-H 10 0 1", "expected": "98.000000 \n102.000000 \n107.000000 \n108.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
- {"option": "-l 0.25 -u 0.75 -m", "expected": "0.495150"},
- {"option": "-d imageForDiff.nii.gz -m", "expected": "0.000000"},
+ {"name": "robust", "option": "-r", "expected": "0.018533 0.978824"},
+ {"name": "notRobust", "option": "-R", "expected": "0.000546 0.999809"},
+ {"name": "entropy", "option": "-e", "expected": "0.906103"},
+ {"name": "entropyNonzero", "option": "-E", "expected": "0.906103"},
+ {"name": "volume", "option": "-v", "expected": "1000 1000.000000"},
+ {"name": "volumeNonzero", "option": "-V", "expected": "1000 1000.000000"},
+ {"name": "mean", "option": "-m", "expected": "0.495922"},
+ {"name": "mean", "option": "-m -a", "expected": "0.495922"},
+ {"name": "mean", "option": "-m -a -n", "expected": "0.495922"},
+ {"name": "meanNonzero", "option": "-M", "expected": "0.495922"},
+ {"name": "stdev", "option": "-s", "expected": "0.290744"},
+ {"name": "stdevNonzero", "option": "-S", "expected": "0.290744"},
+ {"name": "roi","option": "-w", "expected": "0 10 0 10 0 10 0 1"},
+ {"name": "maxCoord", "option": "-x", "expected": "9 7 4"},
+ {"name": "minCoord", "option": "-X", "expected": "8 2 1"},
+ {"name": "cogMM", "option": "-c", "expected": "4.498706 4.545873 4.613188"},
+ {"name": "cogVox","option": "-C", "expected": "4.498706 4.545873 4.613188"},
+ {"name": "percentile", "option": "-p 50", "expected": "0.482584"},
+ {"name": "percentileNonzero","option": "-P 50", "expected": "0.482584"},
+ {"name": "meanHistCog", "option": "-m -h 10 -c", "expected": "0.495922 101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000 \n 4.498706 4.545873 4.613188"},
+ {"name": "meanHist", "option": "-m -h 10", "expected": "0.495922 101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
+ {"name": "hist", "option": "-h 10", "expected": "101.000000 \n99.000000 \n108.000000 \n107.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
+ {"name": "histLimits", "option": "-H 10 0 1", "expected": "98.000000 \n102.000000 \n107.000000 \n108.000000 \n102.000000 \n93.000000 \n99.000000 \n88.000000 \n95.000000 \n108.000000"},
+ {"name": "threshold", "option": "-l 0.25 -u 0.75 -m", "expected": "0.495150"},
+ {"name": "diff", "option": "-d imageForDiff.nii.gz -m", "expected": "0.000000"},
]
# create a list of tests and expected results
@@ -82,6 +82,7 @@ for option in options:
"mask": "",
"options": option["option"],
"expected": option["expected"],
+ "name": option["name"],
}
)
@@ -91,21 +92,49 @@ tests_with_preoptions = [
"mask": "mask.nii.gz",
"options": "-m",
"expected": "1.078044 \n1.028827 \n0.986428 \n1.020869",
+ "name": "preopIndexMaskMean",
},
{
"preoptions": "-t -K",
"mask": "mask.nii.gz",
"options": "-m",
"expected": "0.526682 \n0.515652 \n0.492337 \n0.511661 \n0.551362 \n0.513176 \n0.494091 \n0.509208",
+ "name": "preopIndexMaskMeanTimeSeries",
},
{
"preoptions": "-t",
"mask": "",
"options": "-m",
"expected": "0.503236 \n0.504035",
+ "name": "preopMeanTimeSeries",
},
]
+json_tests = []
+for option in options:
+ file_string = f"test_{option['name']}_{option['option'].replace(' ', '_')}.json"
+ file_string = file_string.replace("-", "")
+ json_tests.append(
+ {
+ "preoptions": "",
+ "mask": "",
+ "options": option["option"],
+ "expected": file_string,
+ }
+ )
+
+for option in tests_with_preoptions:
+ file_string = f"test_{option['name']}_{option['preoptions'].replace(' ', '_')}_{option['options'].replace(' ', '_')}.json"
+ file_string = file_string.replace("-", "")
+ json_tests.append(
+ {
+ "preoptions": option["preoptions"],
+ "mask": option["mask"],
+ "options": option["options"],
+ "expected": file_string,
+ }
+ )
+
def test_fslstats():
imgfile = 'test.nii.gz'
@@ -121,8 +150,11 @@ def test_fslstats():
try:
assert output == test["expected"]
except AssertionError:
+ print('Failed test')
print(cmd)
+ print('Output')
print(output)
+ print('Expected')
print(test["expected"])
raise
@@ -147,6 +179,37 @@ def test_fslstats():
print(test["expected"])
raise
+ # run the json tests
+ for test in json_tests:
+ cmd = f"fslstats -json {test['preoptions']} {test['mask']} {imgfile} {test['options']}"
+ # remove any double spaces from empty test options
+ cmd = " ".join(cmd.split())
+ print(cmd, flush=True)
+ output = run.runfsl(cmd)
+
+ # try to load the expected json file
+ # if it exists, compare the output to the expected
+ try:
+ print(test["expected"])
+ with open(test["expected"], "r") as json_file:
+ # read the file as a string
+ expected = json_file.read()
+ try:
+ assert output == expected
+ except AssertionError:
+ print('Failed test')
+ print(cmd)
+ print('Output')
+ print(output)
+ print('Expected')
+ print(expected)
+ raise
+ except FileNotFoundError:
+ # if the expected json file doesn't exist, create it from the output
+ # usefull for creating new tests or the first time a test is run
+ with open(test["expected"], "w") as json_file:
+ json_file.write(output)
+
if __name__ == "__main__":
test_fslstats()
diff --git a/tests/fslstats/test_cogMM_c.json b/tests/fslstats/test_cogMM_c.json
new file mode 100644
index 0000000..758ec3c
--- /dev/null
+++ b/tests/fslstats/test_cogMM_c.json
@@ -0,0 +1,15 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-c": [
+ 4.505939956803816,
+ 4.486097425091172,
+ 4.488288600081377
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_cogVox_C.json b/tests/fslstats/test_cogVox_C.json
new file mode 100644
index 0000000..1b6b7b0
--- /dev/null
+++ b/tests/fslstats/test_cogVox_C.json
@@ -0,0 +1,15 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-C": [
+ 4.505939956803816,
+ 4.486097425091172,
+ 4.488288600081377
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_diff_d_imageForDiff.nii.gz_m.json b/tests/fslstats/test_diff_d_imageForDiff.nii.gz_m.json
new file mode 100644
index 0000000..76d250a
--- /dev/null
+++ b/tests/fslstats/test_diff_d_imageForDiff.nii.gz_m.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.0077142266542650755
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_entropyNonzero_E.json b/tests/fslstats/test_entropyNonzero_E.json
new file mode 100644
index 0000000..9573a6e
--- /dev/null
+++ b/tests/fslstats/test_entropyNonzero_E.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-E": 0.9468094676591793
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_entropy_e.json b/tests/fslstats/test_entropy_e.json
new file mode 100644
index 0000000..407d186
--- /dev/null
+++ b/tests/fslstats/test_entropy_e.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-e": 0.9468094676591793
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_histLimits_H_10_0_1.json b/tests/fslstats/test_histLimits_H_10_0_1.json
new file mode 100644
index 0000000..4ce81ec
--- /dev/null
+++ b/tests/fslstats/test_histLimits_H_10_0_1.json
@@ -0,0 +1,22 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-H": [
+ 193.0,
+ 220.0,
+ 194.0,
+ 201.0,
+ 190.0,
+ 184.0,
+ 191.0,
+ 199.0,
+ 200.0,
+ 228.0
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_hist_h_10.json b/tests/fslstats/test_hist_h_10.json
new file mode 100644
index 0000000..2e210d2
--- /dev/null
+++ b/tests/fslstats/test_hist_h_10.json
@@ -0,0 +1,22 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-h": [
+ 198.0,
+ 216.0,
+ 194.0,
+ 200.0,
+ 190.0,
+ 184.0,
+ 191.0,
+ 199.0,
+ 199.0,
+ 229.0
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_maxCoord_x.json b/tests/fslstats/test_maxCoord_x.json
new file mode 100644
index 0000000..1a20172
--- /dev/null
+++ b/tests/fslstats/test_maxCoord_x.json
@@ -0,0 +1,15 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-x": [
+ 4,
+ 8,
+ 7
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_meanHistCog_m_h_10_c.json b/tests/fslstats/test_meanHistCog_m_h_10_c.json
new file mode 100644
index 0000000..58380fd
--- /dev/null
+++ b/tests/fslstats/test_meanHistCog_m_h_10_c.json
@@ -0,0 +1,28 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-c": [
+ 4.505939956803816,
+ 4.486097425091172,
+ 4.488288600081377
+ ],
+ "-h": [
+ 198.0,
+ 216.0,
+ 194.0,
+ 200.0,
+ 190.0,
+ 184.0,
+ 191.0,
+ 199.0,
+ 199.0,
+ 229.0
+ ],
+ "-m": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_meanHist_m_h_10.json b/tests/fslstats/test_meanHist_m_h_10.json
new file mode 100644
index 0000000..c8316e5
--- /dev/null
+++ b/tests/fslstats/test_meanHist_m_h_10.json
@@ -0,0 +1,23 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-h": [
+ 198.0,
+ 216.0,
+ 194.0,
+ 200.0,
+ 190.0,
+ 184.0,
+ 191.0,
+ 199.0,
+ 199.0,
+ 229.0
+ ],
+ "-m": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_meanNonzero_M.json b/tests/fslstats/test_meanNonzero_M.json
new file mode 100644
index 0000000..e7892ba
--- /dev/null
+++ b/tests/fslstats/test_meanNonzero_M.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-M": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_mean_m.json b/tests/fslstats/test_mean_m.json
new file mode 100644
index 0000000..3763ba8
--- /dev/null
+++ b/tests/fslstats/test_mean_m.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_mean_m_a.json b/tests/fslstats/test_mean_m_a.json
new file mode 100644
index 0000000..3763ba8
--- /dev/null
+++ b/tests/fslstats/test_mean_m_a.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_mean_m_a_n.json b/tests/fslstats/test_mean_m_a_n.json
new file mode 100644
index 0000000..3763ba8
--- /dev/null
+++ b/tests/fslstats/test_mean_m_a_n.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.5036357601464115
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_minCoord_X.json b/tests/fslstats/test_minCoord_X.json
new file mode 100644
index 0000000..aa72b2e
--- /dev/null
+++ b/tests/fslstats/test_minCoord_X.json
@@ -0,0 +1,15 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-X": [
+ 8,
+ 1,
+ 6
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_notRobust_R.json b/tests/fslstats/test_notRobust_R.json
new file mode 100644
index 0000000..b5b7acd
--- /dev/null
+++ b/tests/fslstats/test_notRobust_R.json
@@ -0,0 +1,14 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-R": [
+ 0.00036734374589286745,
+ 0.9998085498809814
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_percentileNonzero_P_50.json b/tests/fslstats/test_percentileNonzero_P_50.json
new file mode 100644
index 0000000..47aeceb
--- /dev/null
+++ b/tests/fslstats/test_percentileNonzero_P_50.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-P": 0.5013243556022644
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_percentile_p_50.json b/tests/fslstats/test_percentile_p_50.json
new file mode 100644
index 0000000..a105e7c
--- /dev/null
+++ b/tests/fslstats/test_percentile_p_50.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-p": 0.5013243556022644
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_preopIndexMaskMeanTimeSeries_t_K_m.json b/tests/fslstats/test_preopIndexMaskMeanTimeSeries_t_K_m.json
new file mode 100644
index 0000000..9f0e754
--- /dev/null
+++ b/tests/fslstats/test_preopIndexMaskMeanTimeSeries_t_K_m.json
@@ -0,0 +1,36 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.5266819608311916
+ },
+ {
+ "-m": 0.5156517274568186
+ },
+ {
+ "-m": 0.49233699466459285
+ },
+ {
+ "-m": 0.5116614613561304
+ }
+ ]
+ },
+ {
+ "indices": [
+ {
+ "-m": 0.5513619920395724
+ },
+ {
+ "-m": 0.5131755568141885
+ },
+ {
+ "-m": 0.49409089087108476
+ },
+ {
+ "-m": 0.5092079986783641
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_preopIndexMaskMean_K_m.json b/tests/fslstats/test_preopIndexMaskMean_K_m.json
new file mode 100644
index 0000000..fd62a2f
--- /dev/null
+++ b/tests/fslstats/test_preopIndexMaskMean_K_m.json
@@ -0,0 +1,20 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 1.078043952870764
+ },
+ {
+ "-m": 1.0288272842710071
+ },
+ {
+ "-m": 0.9864278855356776
+ },
+ {
+ "-m": 1.0208694600344945
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_preopMeanTimeSeries_t_m.json b/tests/fslstats/test_preopMeanTimeSeries_t_m.json
new file mode 100644
index 0000000..b2b481f
--- /dev/null
+++ b/tests/fslstats/test_preopMeanTimeSeries_t_m.json
@@ -0,0 +1,18 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.503236498022452
+ }
+ ]
+ },
+ {
+ "indices": [
+ {
+ "-m": 0.504035022270371
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_robust_r.json b/tests/fslstats/test_robust_r.json
new file mode 100644
index 0000000..9810ac1
--- /dev/null
+++ b/tests/fslstats/test_robust_r.json
@@ -0,0 +1,14 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-r": [
+ 0.018357284367084503,
+ 0.982818067073822
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_roi_w.json b/tests/fslstats/test_roi_w.json
new file mode 100644
index 0000000..d023769
--- /dev/null
+++ b/tests/fslstats/test_roi_w.json
@@ -0,0 +1,20 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-w": [
+ 0,
+ 10,
+ 0,
+ 10,
+ 0,
+ 10,
+ 0,
+ 2
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_stdevNonzero_S.json b/tests/fslstats/test_stdevNonzero_S.json
new file mode 100644
index 0000000..cdb0547
--- /dev/null
+++ b/tests/fslstats/test_stdevNonzero_S.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-S": 0.2949828225878523
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_stdev_s.json b/tests/fslstats/test_stdev_s.json
new file mode 100644
index 0000000..b473581
--- /dev/null
+++ b/tests/fslstats/test_stdev_s.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-s": 0.29498282199940035
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_threshold_l_0.25_u_0.75_m.json b/tests/fslstats/test_threshold_l_0.25_u_0.75_m.json
new file mode 100644
index 0000000..6712e13
--- /dev/null
+++ b/tests/fslstats/test_threshold_l_0.25_u_0.75_m.json
@@ -0,0 +1,11 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-m": 0.49646345829352356
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_volumeNonzero_V.json b/tests/fslstats/test_volumeNonzero_V.json
new file mode 100644
index 0000000..9a1ed33
--- /dev/null
+++ b/tests/fslstats/test_volumeNonzero_V.json
@@ -0,0 +1,14 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-V": [
+ 2000.0,
+ 2000.0
+ ]
+ }
+ ]
+ }
+ ]
+}
diff --git a/tests/fslstats/test_volume_v.json b/tests/fslstats/test_volume_v.json
new file mode 100644
index 0000000..5e4fb29
--- /dev/null
+++ b/tests/fslstats/test_volume_v.json
@@ -0,0 +1,14 @@
+{
+ "volumes": [
+ {
+ "indices": [
+ {
+ "-v": [
+ 2000.0,
+ 2000.0
+ ]
+ }
+ ]
+ }
+ ]
+}
--
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