From 9780fa21eac03e474ab5458611a422bc2e003fae Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Thu, 5 Feb 2009 14:03:14 +0000
Subject: [PATCH] fixed help text
---
fslstats.cc | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/fslstats.cc b/fslstats.cc
index 7d84925..8d6e5bf 100644
--- a/fslstats.cc
+++ b/fslstats.cc
@@ -21,7 +21,7 @@ bool uthr_used=false;
void print_usage(const string& progname) {
cout << "Usage: fslstats <input> [options]" << endl << endl;
- cout << endl;
+ cout << "Note - options are applied in order, e.g. -M -l 10 -M will report the non-zero mean, apply a threshold and then report the new nonzero mean" << endl << endl;
cout << "-l <lthresh> : set lower threshold" << endl;
cout << "-u <uthresh> : set upper threshold" << endl;
cout << "-r : output <robust min intensity> <robust max intensity>" << endl;
@@ -45,8 +45,7 @@ void print_usage(const string& progname) {
cout << "-n : treat NaN or Inf as zero for subsequent stats" << endl;
cout << "-k <mask> : use the specified image (filename) for masking - overrides lower and upper thresholds" << endl;
cout << "-h <nbins> : output a histogram (for the thresholded/masked voxels only) with nbins" << endl;
- cout << "-H <nbins> <min> <max> : output a histogram (for the thresholded/masked voxels only) with nbins and histogram limits of min and max" << endl;
- cout << endl;
+ cout << "-H <nbins> <min> <max> : output a histogram (for the thresholded/masked voxels only) with nbins and histogram limits of min and max" << endl << endl;
cout << "Note - thresholds are not inclusive ie lthresh<allowed<uthresh" << endl;
}
--
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