From bce01ef6cffb06b0b5db66a55748ed8d2fffd9b1 Mon Sep 17 00:00:00 2001
From: Taylor Hanayik <taylor.hanayik@ndcn.ox.ac.uk>
Date: Fri, 19 Jul 2019 13:01:40 +0100
Subject: [PATCH] better output formatting for atlas masks
---
fslstats.cc | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/fslstats.cc b/fslstats.cc
index 5fc26e3..921111e 100644
--- a/fslstats.cc
+++ b/fslstats.cc
@@ -136,6 +136,10 @@ int fmrib_main_float(int argc, char* argv[],const bool timeseriesMode, const str
copyconvert(indexMask,mask);
mask.binarise(index-1,index+1,exclusive);
vol=indexMaster*mask;
+ if (mask.max() < 1) {
+ cout << "missing label: " << index << " in mask" << endl;
+ continue;
+ }
generateNonZeroMask(mask,masknz,vol);
}
int narg(2);
@@ -465,8 +469,8 @@ int fmrib_main_float(int argc, char* argv[],const bool timeseriesMode, const str
narg++;
}
+ cout << endl;
}
- cout << endl;
}
return 0;
--
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