diff --git a/tests/fslswapdim_test.sh b/tests/fslswapdim_test.sh new file mode 100755 index 0000000000000000000000000000000000000000..e38f25b9182023cdef772ba19f8f57552dca7609 --- /dev/null +++ b/tests/fslswapdim_test.sh @@ -0,0 +1,43 @@ +#!/bin/bash + +## NOTE: needs links or copies of various fsl utilities to exist in ../bin at the moment (annoyingly!) + +num=1; +for aa in RL LR ; do + for bb in RL LR ; do + for cc in RL LR ; do + for tr1 in RLAPSI RLSIAP APSIRL APRLSI SIRLAP SIAPRL ; do + aaa=`echo $aa | tr R ${tr1:0:1} | tr L ${tr1:1:1}`; + bbb=`echo $bb | tr R ${tr1:2:1} | tr L ${tr1:3:1}`; + ccc=`echo $cc | tr R ${tr1:4:1} | tr L ${tr1:5:1}`; + echo $aaa $bbb $ccc + ( export FSLDIR=`pwd`/.. ; $FSLDIR/bin/fslswapdim /usr/local/fsl/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooNEW_$num ) + echo $FSLDIR + $FSLDIR/bin/fslswapdim $FSLDIR/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooOLD_$num + diff fooNEW_${num}.nii.gz fooOLD_${num}.nii.gz + num=`echo $num + 1 | bc` + done + done + done +done + + +# num=1; +# for aa in x -x ; do +# for bb in x -x ; do +# for cc in x -x ; do +# for tr1 in xyz yzx zxy xzy yxz zyx ; do +# aaa=`echo $aa | tr x ${tr1:0:1}`; +# bbb=`echo $bb | tr x ${tr1:1:1}`; +# ccc=`echo $cc | tr x ${tr1:2:1}`; +# echo $aaa $bbb $ccc +# ( export FSLDIR=`pwd`/.. ; $FSLDIR/bin/fslswapdim /usr/local/fsl/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooNEW_$num ) +# echo $FSLDIR +# $FSLDIR/bin/fslswapdim $FSLDIR/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooOLD_$num +# diff fooNEW_${num}.nii.gz fooOLD_${num}.nii.gz +# num=`echo $num + 1 | bc` +# done +# done +# done +# done +