From d8baad783b37ec6d9eeb7cabb06aae609b5f21d9 Mon Sep 17 00:00:00 2001
From: Mark Jenkinson <mark@fmrib.ox.ac.uk>
Date: Mon, 13 Aug 2012 11:15:10 +0000
Subject: [PATCH] Initial tests of new fslswapdim, need to add neurological
input for RL testing
---
tests/fslswapdim_test.sh | 43 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
create mode 100755 tests/fslswapdim_test.sh
diff --git a/tests/fslswapdim_test.sh b/tests/fslswapdim_test.sh
new file mode 100755
index 0000000..e38f25b
--- /dev/null
+++ b/tests/fslswapdim_test.sh
@@ -0,0 +1,43 @@
+#!/bin/bash
+
+## NOTE: needs links or copies of various fsl utilities to exist in ../bin at the moment (annoyingly!)
+
+num=1;
+for aa in RL LR ; do
+ for bb in RL LR ; do
+ for cc in RL LR ; do
+ for tr1 in RLAPSI RLSIAP APSIRL APRLSI SIRLAP SIAPRL ; do
+ aaa=`echo $aa | tr R ${tr1:0:1} | tr L ${tr1:1:1}`;
+ bbb=`echo $bb | tr R ${tr1:2:1} | tr L ${tr1:3:1}`;
+ ccc=`echo $cc | tr R ${tr1:4:1} | tr L ${tr1:5:1}`;
+ echo $aaa $bbb $ccc
+ ( export FSLDIR=`pwd`/.. ; $FSLDIR/bin/fslswapdim /usr/local/fsl/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooNEW_$num )
+ echo $FSLDIR
+ $FSLDIR/bin/fslswapdim $FSLDIR/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooOLD_$num
+ diff fooNEW_${num}.nii.gz fooOLD_${num}.nii.gz
+ num=`echo $num + 1 | bc`
+ done
+ done
+ done
+done
+
+
+# num=1;
+# for aa in x -x ; do
+# for bb in x -x ; do
+# for cc in x -x ; do
+# for tr1 in xyz yzx zxy xzy yxz zyx ; do
+# aaa=`echo $aa | tr x ${tr1:0:1}`;
+# bbb=`echo $bb | tr x ${tr1:1:1}`;
+# ccc=`echo $cc | tr x ${tr1:2:1}`;
+# echo $aaa $bbb $ccc
+# ( export FSLDIR=`pwd`/.. ; $FSLDIR/bin/fslswapdim /usr/local/fsl/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooNEW_$num )
+# echo $FSLDIR
+# $FSLDIR/bin/fslswapdim $FSLDIR/data/standard/MNI152_T1_2mm $aaa $bbb $ccc fooOLD_$num
+# diff fooNEW_${num}.nii.gz fooOLD_${num}.nii.gz
+# num=`echo $num + 1 | bc`
+# done
+# done
+# done
+# done
+
--
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