diff --git a/Makefile b/Makefile new file mode 100644 index 0000000000000000000000000000000000000000..1eac9931c6d6070dcccad7b5c1452ac7eb29bc11 --- /dev/null +++ b/Makefile @@ -0,0 +1,30 @@ +MKDIR ?= /bin/mkdir -m 0755 +INSTALL ?= install -p +PREFIX ?= ${FSLDEVDIR} + +install: + ${MKDIR} -p ${PREFIX}/bin + ${MKDIR} -p ${PREFIX}/config + ${MKDIR} -p ${PREFIX}/doc/images + ${MKDIR} -p ${PREFIX}/etc/fslconf + ${MKDIR} -p ${PREFIX}/etc/flirtsch + ${MKDIR} -p ${PREFIX}/etc/js + ${MKDIR} -p ${PREFIX}/etc/luts + ${MKDIR} -p ${PREFIX}/etc/matlab + ${MKDIR} -p ${PREFIX}/share/fsl/copyrights + ${MKDIR} -p ${PREFIX}/share/fsl/sbin + ${MKDIR} -p ${PREFIX}/share/fsl/bin + + ${INSTALL} -m 0755 bin/* ${PREFIX}/bin/ + ${INSTALL} -m 0755 bin/* ${PREFIX}/share/fsl/bin/ + ${INSTALL} -m 0644 config/* ${PREFIX}/config/ + ${INSTALL} -m 0755 config/supportedGencodes.sh ${PREFIX}/config/ + ${INSTALL} -m 0644 doc/images/* ${PREFIX}/doc/images/ + ${INSTALL} -m 0644 etc/fslconf/* ${PREFIX}/etc/fslconf/ + ${INSTALL} -m 0644 etc/flirtsch/* ${PREFIX}/etc/flirtsch/ + ${INSTALL} -m 0644 etc/fslconf/* ${PREFIX}/etc/fslconf/ + ${INSTALL} -m 0644 etc/js/* ${PREFIX}/etc/js/ + ${INSTALL} -m 0644 etc/luts/* ${PREFIX}/etc/luts/ + ${INSTALL} -m 0644 etc/matlab/* ${PREFIX}/etc/matlab/ + ${INSTALL} -m 0644 share/fsl/copyrights/* ${PREFIX}/share/fsl/copyrights/ + ${INSTALL} -m 0755 share/fsl/sbin/* ${PREFIX}/share/fsl/sbin/ diff --git a/etc/fslconf/fsl-devel.sh b/etc/fslconf/fsl-devel.sh index 6820726cedbe8d06fbf72df95e804cd0fec7c078..4b1559cfded596873251cb3251b7d1b19479c53b 100644 --- a/etc/fslconf/fsl-devel.sh +++ b/etc/fslconf/fsl-devel.sh @@ -10,9 +10,6 @@ # source $FSLDIR/etc/fslconf/fsl-devel.sh # -# SHBASECOPYRIGHT - - # If this is an official (fslinstaller-installed) # FSL installation, we activate the $FSLDIR conda # environment so that we have access to its compiler diff --git a/etc/fslconf/fsl.csh b/etc/fslconf/fsl.csh index 970051348930722c818ceb1ab077c3a1b427a26d..f5c58fa35a9b00360ae99f7f8a0814582a624657 100644 --- a/etc/fslconf/fsl.csh +++ b/etc/fslconf/fsl.csh @@ -5,8 +5,6 @@ # Written by Mark Jenkinson # FMRIB Analysis Group, University of Oxford -# SHBASECOPYRIGHT - #### Set up standard FSL user environment variables #### diff --git a/etc/fslconf/fsl.sh b/etc/fslconf/fsl.sh index a7c356a49f826874724bef576c4ee05e5d0f0a1d..3be2ad6753630b13b8cd55720523bc62cbe87856 100644 --- a/etc/fslconf/fsl.sh +++ b/etc/fslconf/fsl.sh @@ -7,14 +7,11 @@ # export FSLDIR=/usr/local/fsl # source $FSLDIR/etc/fslconf/fsl.sh # -# See fsl-devel.sh if you are a developer. +# See fsl-devel.sh if you are compiling FSL projects. # # Written by Mark Jenkinson # FMRIB Analysis Group, University of Oxford -# SHBASECOPYRIGHT - - #### Set up standard FSL user environment variables #### # If this is an official (fslinstaller-installed)