From 00b4883e7de80548cd11836ffe3a61a3091a34fa Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 4 Jun 2021 17:02:59 +0100
Subject: [PATCH] MNT: Add makefile
---
Makefile | 30 ++++++++++++++++++++++++++++++
etc/fslconf/fsl-devel.sh | 3 ---
etc/fslconf/fsl.csh | 2 --
etc/fslconf/fsl.sh | 5 +----
4 files changed, 31 insertions(+), 9 deletions(-)
create mode 100644 Makefile
diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..1eac993
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,30 @@
+MKDIR ?= /bin/mkdir -m 0755
+INSTALL ?= install -p
+PREFIX ?= ${FSLDEVDIR}
+
+install:
+ ${MKDIR} -p ${PREFIX}/bin
+ ${MKDIR} -p ${PREFIX}/config
+ ${MKDIR} -p ${PREFIX}/doc/images
+ ${MKDIR} -p ${PREFIX}/etc/fslconf
+ ${MKDIR} -p ${PREFIX}/etc/flirtsch
+ ${MKDIR} -p ${PREFIX}/etc/js
+ ${MKDIR} -p ${PREFIX}/etc/luts
+ ${MKDIR} -p ${PREFIX}/etc/matlab
+ ${MKDIR} -p ${PREFIX}/share/fsl/copyrights
+ ${MKDIR} -p ${PREFIX}/share/fsl/sbin
+ ${MKDIR} -p ${PREFIX}/share/fsl/bin
+
+ ${INSTALL} -m 0755 bin/* ${PREFIX}/bin/
+ ${INSTALL} -m 0755 bin/* ${PREFIX}/share/fsl/bin/
+ ${INSTALL} -m 0644 config/* ${PREFIX}/config/
+ ${INSTALL} -m 0755 config/supportedGencodes.sh ${PREFIX}/config/
+ ${INSTALL} -m 0644 doc/images/* ${PREFIX}/doc/images/
+ ${INSTALL} -m 0644 etc/fslconf/* ${PREFIX}/etc/fslconf/
+ ${INSTALL} -m 0644 etc/flirtsch/* ${PREFIX}/etc/flirtsch/
+ ${INSTALL} -m 0644 etc/fslconf/* ${PREFIX}/etc/fslconf/
+ ${INSTALL} -m 0644 etc/js/* ${PREFIX}/etc/js/
+ ${INSTALL} -m 0644 etc/luts/* ${PREFIX}/etc/luts/
+ ${INSTALL} -m 0644 etc/matlab/* ${PREFIX}/etc/matlab/
+ ${INSTALL} -m 0644 share/fsl/copyrights/* ${PREFIX}/share/fsl/copyrights/
+ ${INSTALL} -m 0755 share/fsl/sbin/* ${PREFIX}/share/fsl/sbin/
diff --git a/etc/fslconf/fsl-devel.sh b/etc/fslconf/fsl-devel.sh
index 6820726..4b1559c 100644
--- a/etc/fslconf/fsl-devel.sh
+++ b/etc/fslconf/fsl-devel.sh
@@ -10,9 +10,6 @@
# source $FSLDIR/etc/fslconf/fsl-devel.sh
#
-# SHBASECOPYRIGHT
-
-
# If this is an official (fslinstaller-installed)
# FSL installation, we activate the $FSLDIR conda
# environment so that we have access to its compiler
diff --git a/etc/fslconf/fsl.csh b/etc/fslconf/fsl.csh
index 9700513..f5c58fa 100644
--- a/etc/fslconf/fsl.csh
+++ b/etc/fslconf/fsl.csh
@@ -5,8 +5,6 @@
# Written by Mark Jenkinson
# FMRIB Analysis Group, University of Oxford
-# SHBASECOPYRIGHT
-
#### Set up standard FSL user environment variables ####
diff --git a/etc/fslconf/fsl.sh b/etc/fslconf/fsl.sh
index a7c356a..3be2ad6 100644
--- a/etc/fslconf/fsl.sh
+++ b/etc/fslconf/fsl.sh
@@ -7,14 +7,11 @@
# export FSLDIR=/usr/local/fsl
# source $FSLDIR/etc/fslconf/fsl.sh
#
-# See fsl-devel.sh if you are a developer.
+# See fsl-devel.sh if you are compiling FSL projects.
#
# Written by Mark Jenkinson
# FMRIB Analysis Group, University of Oxford
-# SHBASECOPYRIGHT
-
-
#### Set up standard FSL user environment variables ####
# If this is an official (fslinstaller-installed)
--
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