From b7ab6831990103614706073312ae21d5a7fc7873 Mon Sep 17 00:00:00 2001
From: Fidel Alfaro Almagro <falmagro@fmrib.ox.ac.uk>
Date: Fri, 10 Feb 2023 09:36:39 +0000
Subject: [PATCH] Fix bug
---
bip/pipelines/struct_FS/FS_proc.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/bip/pipelines/struct_FS/FS_proc.py b/bip/pipelines/struct_FS/FS_proc.py
index 4022122..3782d8d 100755
--- a/bip/pipelines/struct_FS/FS_proc.py
+++ b/bip/pipelines/struct_FS/FS_proc.py
@@ -31,9 +31,8 @@ def run(ctx,
if os.path.exists(FreeSurfer_dir):
shutil.rmtree(FreeSurfer_dir)
- env = dict(os.environ, SUBJECTS_DIR=os.getcwd())
+ env = dict(os.environ, SUBJECTS_DIR=os.getcwd() + "/" + ctx.subject)
- os.environ["SUBJECTS_DIR"] = subjects_dir + "/" + ctx.subject
T1_path = subjects_dir + "/" + T1_unbiased
T2_path = subjects_dir + "/" + T2_FLAIR_unbiased
--
GitLab