From ed067fb20afca8b6a1060d747ada11becabfdbcb Mon Sep 17 00:00:00 2001
From: Fidel Alfaro Almagro <falmagro@fmrib.ox.ac.uk>
Date: Fri, 10 Feb 2023 09:25:17 +0000
Subject: [PATCH] Improvements in run_command
---
bip/utils/log_utils.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/bip/utils/log_utils.py b/bip/utils/log_utils.py
index d40dd90..5fa6e41 100755
--- a/bip/utils/log_utils.py
+++ b/bip/utils/log_utils.py
@@ -22,10 +22,10 @@ from subprocess import check_output
from fsl import wrappers
-def run_command(logger, command, env):
+def run_command(logger, command, **kwargs):
try:
logger.info('COMMAND TO RUN: \t' + command.strip())
- job_output = check_output(command, shell=True, env=env).decode('UTF-8')
+ job_output = check_output(command,shell=True,**kawargs).decode('UTF-8')
logger.info('COMMAND OUTPUT: \t' + job_output.strip())
except Exception as e:
logger.error('Exception raised during: \t' + command.strip())
--
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