#!/bin/sh
# convert cluster text output to html
#
# Mark Jenkinson, FMRIB Image Analysis Group
#
# Copyright (C) 1999-2004 University of Oxford
#
# SHCOPYRIGHT
Usage() {
echo "Usage: cluster2html <featdir> <inroot> [-std]"
echo "<inroot> should not contain the _std extension"
exit
}
[ "$1" = "" -o "$2" = "" ] && Usage
cd $1
shift
FSLSLASH=""
if [ X`uname | grep CYGWIN`X != XX ] ; then
FSLSLASH="C:/cygwin"
fi
if [ "$2" = "" ] ; then
echo "<HTML><TITLE>Cluster List</TITLE><BODY BACKGROUND=\"file:${FSLSLASH}$FSLDIR/doc/images/fsl-bg.jpg\">" > $1.html
echo "<CENTER><hr>Co-ordinate information for $1 - <A HREF=\"$1_std.html\">Standard-space version</A> (if present) - <A HREF=\"report.html\">back</A> to main FEAT report<hr>" >> $1.html
echo "<H1>Cluster List</H1>" >> $1.html
echo "<table border=3 cellspacing=3>" >> $1.html
cat $1.txt | sed "s/ /<td>/g" \
| sed "s/^\(.*\)$/<tr><td>\1<\/tr>/" \
| sed "1s/<td>/<th>/g" >> $1.html
echo "</TABLE>" >> $1.html
lmaxname=`echo $1 | sed "s/cluster/lmax/g"`.txt
if [ -f $lmaxname ] ; then
echo "<br><br><H1>Local Maxima</H1>" >> $1.html
echo "<table border=3 cellspacing=3>" >> $1.html
cat $lmaxname | sed "s/ /<td>/g" \
| sed "s/^\(.*\)$/<tr><td>\1<\/tr>/" \
| sed "1s/<td>/<th>/g" >> $1.html
echo "</TABLE>" >> $1.html
fi
echo "</BODY></HTML>" >> $1.html
else
echo "<HTML><TITLE>Standard-Space Cluster List</TITLE><BODY BACKGROUND=\"file:${FSLSLASH}$FSLDIR/doc/images/fsl-bg.jpg\">" > $1_std.html
echo "<CENTER><hr>Co-ordinate information for $1 - " >> $1_std.html
if [ -f $1.html ] ; then
echo "<A HREF=\"$1.html\">voxel-space version</A> - " >> $1_std.html
fi
echo "<A HREF=\"report.html\">back</A> to main FEAT report<hr>" >> $1_std.html
echo "<H1>Cluster List</H1>" >> $1_std.html
echo "<table border=3 cellspacing=3>" >> $1_std.html
cat $1_std.txt | sed "s/ /<td>/g" \
| sed "s/^\(.*\)$/<tr><td>\1<\/tr>/" \
| sed "1s/<td>/<th>/g" >> $1_std.html
echo "</TABLE>" >> $1_std.html
lmaxname=`echo $1 | sed "s/cluster/lmax/g"`_std.txt
if [ -f $lmaxname ] ; then
echo "<br><br><H1>Local Maxima</H1>" >> $1_std.html
echo "<table border=3 cellspacing=3>" >> $1_std.html
cat $lmaxname | sed "s/ /<td>/g" \
| sed "s/^\(.*\)$/<tr><td>\1<\/tr>/" \
| sed "1s/<td>/<th>/g" >> $1_std.html
echo "</TABLE>" >> $1_std.html
fi
echo "</BODY></HTML>" >> $1_std.html
fi