Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
FSL
conda
docs
Commits
707b0b74
Commit
707b0b74
authored
Oct 22, 2021
by
Paul McCarthy
🚵
Browse files
DOC: small fixes/adjustments
parent
84cecb04
Changes
4
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
707b0b74
...
...
@@ -37,7 +37,7 @@ https://git.fmrib.ox.ac.uk.
fsl/conda/manifest> repository
-
fsl/conda/installer>: Home of the
`fslinstaller.py`
script, for
installing FSL
-
fsl/conda/fsl-ci-rules>: CI rules for automated building and publishing
-
fsl/conda/fsl-ci-rules>: CI rules for automated building and publishing
of FSL conda packages
-
`fsl/<project>`
: Source code repository for FSL project
`<project>`
(e.g. fsl/avwutils>)
...
...
@@ -90,7 +90,8 @@ new release are automatically generated from information stored in the
The
`manifest.json`
and
`environment.yml`
files for public and internal
release are currently published to http://18.133.213.73/releases/.
release are currently published to
https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/.
## The `fslinstaller.py` script
...
...
development_workflow.md
View file @
707b0b74
...
...
@@ -6,9 +6,9 @@ projects - it does not describe the release process for full/official FSL
installations.
All FSL projects are released and published as conda
packages, either in the
internal
FMRIB conda channel, or on
https://anaconda.org, via
[
`conda-forge`
](
https://conda-forge.org/
)
.
All FSL projects
and dependencies
are released and published as conda
packages, either in the internally managed
FMRIB conda channel, or on
https://anaconda.org, via
[
`conda-forge`
](
https://conda-forge.org/
)
.
## Project and recipe repositories
...
...
local_development.md
View file @
707b0b74
...
...
@@ -3,7 +3,7 @@
*
This document is written under the assumption that you have FSL 6.0.6 or
newer, installed via the fslinstaller script. These instructions will not work
for manually managed FSL installations.
*
for older versions of FSL, nor
for manually managed FSL installations.
*
This document describes how to set up a local development environment for
...
...
@@ -45,7 +45,7 @@ git clone https://git.fmrib.ox.ac.uk/fsl/randomise.git
cd
randomise
# Or work with the version you have installed
cd
$FSLDIR
/src/randomise/
cd
$FSLDIR
/src/
fsl-
randomise/
# compile
make
...
...
official_fsl_installations.md
View file @
707b0b74
...
...
@@ -11,6 +11,11 @@ all FSL projects are installed directly into the base miniconda environment
at
`$FSLDIR`
.
> An FSL installation may be baed on
> [miniforge](https://github.com/conda-forge/miniforge), which is a variant of
> miniconda tailored specifically for conda-forge.
An official (
`fslinstaller`
-installed) FSL installation can be distinguished
from a manually installed/managed FSL installation by the presence of a file
called
`$FSLDIR/etc/fslversion`
. This file is created by the
`fslinstaller.py`
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment