BF: Don't split shell commands. Rev instead of repo

fsl_ci/__init__.py

@@ -65,8 +65,11 @@ def indir(dirname):
 def sprun(cmd, **kwargs):
     """Runs the given command with subprocess.run. """
     fprint(f'Running {cmd}')
-    cmd = shlex.split(cmd)
-    return sp.run(cmd, check=True, **kwargs)
+    if not kwargs.get('shell', False):
+        cmd = shlex.split(cmd)
+    if 'check' not in kwargs:
+        kwargs['check'] = True
+    return sp.run(cmd, **kwargs)
 
 
 def is_valid_project_version(version):

fsl_ci/conda.py

@@ -133,7 +133,7 @@ def get_project_repository_and_revision(filename, ignore_env=False):
 
     source = meta.get('source', {})
     repo   = source.get('git_url', '').strip()
-    rev    = source.get('git_url', '').strip()
+    rev    = source.get('git_rev', '').strip()
 
     if repo == '': repo = None
     if rev  == '': rev  = None

fsl_ci/scripts/run_unit_tests.py

@@ -29,6 +29,7 @@ def checkout_project_repository_shortcut_if_no_tests(project_dir):
 
     # If no feedsRun tests can be found, we abort the job
     hits = glob.glob(op.join(project_dir, '**', 'feedsRun*'))
+
     if len(hits) == 0:
         print(f'No feedsRun scripts found in project source repository '
               f'({repo}:{rev} - aborting test.')
@@ -80,7 +81,6 @@ def run_tests(project_dir, test_output_dir):
     commands.append(f'export FSLDIR={condaenv}')
     commands.append('. $FSLDIR/etc/fslconf/fsl.sh')
     commands.append(f'pyfeeds run -v -k {cfg} '
-                    f'-i {project_dir} '
                     f'-o {test_output_dir} '
                     f'{project_dir}')