From 7c2f653dfc008e730129ff1ec2e0e239160cd7da Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Mon, 14 Dec 2020 17:10:04 +0000
Subject: [PATCH] MNT: Initial auto-generated conda recipe for
fsl/conda/fsl-swe
---
build.sh | 4 +++-
meta.yaml | 28 +++++++++++++++-------------
post-link.sh | 3 +++
pre-unlink.sh | 3 +++
4 files changed, 24 insertions(+), 14 deletions(-)
create mode 100644 post-link.sh
create mode 100644 pre-unlink.sh
diff --git a/build.sh b/build.sh
index 231b9ca..415432f 100644
--- a/build.sh
+++ b/build.sh
@@ -3,7 +3,9 @@
export FSLDIR=$PREFIX
export FSLDEVDIR=$PREFIX
-. $FSLDIR/etc/fslconf/fsl.sh
+mkdir -p $PREFIX/src/
+cp -r $(pwd) $PREFIX/src/$PKG_NAME
+
. $FSLDIR/etc/fslconf/fsl-devel.sh
make
diff --git a/meta.yaml b/meta.yaml
index a083ab0..aceab06 100644
--- a/meta.yaml
+++ b/meta.yaml
@@ -1,10 +1,11 @@
# This is a FSL conda recipe for: fsl-swe
-# The project git repository is: git@git.fmrib.ox.ac.uk:fsl/swe.git
-# The git repository for this conda recipe is: git@git.fmrib.ox.ac.uk:fsl/conda/fsl-swe.git
+# The project git repository is: https://git.fmrib.ox.ac.uk/fsl/swe.git
+# The git repository for this conda recipe is: https://git.fmrib.ox.ac.uk/fsl/conda/fsl-swe.git
{% set name = 'fsl-swe' %}
{% set version = 'v1.0.3' %}
-{% set repository = 'git@git.fmrib.ox.ac.uk:fsl/swe.git' %}
+{% set repository = 'https://git.fmrib.ox.ac.uk/fsl/swe.git' %}
+{% set build = '0' %}
package:
name: {{ name }}
@@ -14,23 +15,24 @@ source:
# the FSLCONDA_REPOSITORY and FSLCONDA_REVISION
# environment variables can be used to override
# the repository/revision for development purposes.
- git_url: {{ os.environ.get("FSLCONDA_REPOSITORY", repository) }}
- git_rev: {{ os.environ.get("FSLCONDA_REVISION", version) }}
- git_depth: 1
+ git_url: {{ os.environ.get("FSLCONDA_REPOSITORY", repository) }}
+ git_rev: {{ os.environ.get("FSLCONDA_REVISION", version) }}
build:
+ number: {{ build }}
run_exports:
strong:
- {{ name }}
requirements:
host:
- - {{ compiler('cxx') }}
- - fsl-base >=2007.0
- - fsl-newnifti >=3.0.4
+ - {{ compiler("cxx") }}
+ - fsl-base >=2012.0
+ - make
- fsl-armawrap >=0.4.1
- fsl-cprob >=2006.0
- - fsl-miscmaths >=2001.0
- - fsl-newimage >=2006.0
- - fsl-utils >=1908.0
- - fsl-znzlib >=2006.0
+ - fsl-miscmaths >=2010.0
+ - fsl-newimage >=2011.0
+ - fsl-newnifti >=3.0.6
+ - fsl-utils >=2007.0
+ - fsl-znzlib >=2012.0
diff --git a/post-link.sh b/post-link.sh
new file mode 100644
index 0000000..173f216
--- /dev/null
+++ b/post-link.sh
@@ -0,0 +1,3 @@
+if [ -e ${FSLDIR}/share/fsl/sbin/createFSLWrapper ]; then
+ ${FSLDIR}/share/fsl/sbin/createFSLWrapper swe
+fi
diff --git a/pre-unlink.sh b/pre-unlink.sh
new file mode 100644
index 0000000..0e10f96
--- /dev/null
+++ b/pre-unlink.sh
@@ -0,0 +1,3 @@
+if [ -e ${FSLDIR}/share/fsl/sbin/removeFSLWrapper ]; then
+ ${FSLDIR}/share/fsl/sbin/removeFSLWrapper swe
+fi
--
GitLab