fsl-release.yml 5 KB
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# URL to FSL release information. The fslinstaller.py
# script, and previously generated manifest.json
# file is assumed to be downloadable from this URL.
# URLs for newly generated environment files are
# constructed using this URL.
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release-url: https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/
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# Latest fslinstaller version
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installer: 1.5.0
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# URLs to miniconda installers to
# use for all supported platforms
miniconda:
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 linux-64: https://github.com/conda-forge/miniforge/releases/download/4.10.3-7/Miniforge3-4.10.3-7-Linux-x86_64.sh
 macos-64: https://github.com/conda-forge/miniforge/releases/download/4.10.3-7/Miniforge3-4.10.3-7-MacOSX-x86_64.sh
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# Versions of CUDA for which FSL packages are
# built (currently only available on Linux).
cuda:
 - 9.2
 - 10.2
 - 11.0
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 - 11.1
 - 11.3
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# Conda channels to source packages from
channels:
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 - https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
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 - conda-forge
 - defaults

# Private internal channel for development and
# testing releases. This is prepended to the
# channels list for development releases.
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internal-channel: http://${FSLCONDA_USERNAME}:${FSLCONDA_PASSWORD}@fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/internal/
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# The FSL installation is created in two stages.
# First of all, the base_packages are installed.
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# Versions of these packages are specified in
# the packages list below
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base-packages:
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 - fslpy
 - fsl-base
 - fsl-sub
 - fsl-sub_plugin_sge
 - fsl-sub_plugin_slurm
 - libopenblas
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# List of all packages that comprise a FSL
# installation. All packages not installed
# in the first stage (see base_packages
# above) are installed in the second stage.
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packages:
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 - ciftilib 1.5.3
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 - fmrib-unpack 2.8.0
 - fsleyes 1.3.0
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 - fslpy 3.7.1
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 - fsl-add_module 0.3.2
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 - fsl-armawrap 0.6.0
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 - fsl-asl_mfree v1.0.2
 - fsl-avwutils 2101.0
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 - fsl-base 2111.3
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 - fsl-basil v4.0.4
 - fsl-basisfield 1910.0
 - fsl-baycest 2012.0
 - fsl-bet2 2103.0
 - fsl-bianca 2106.0
 - fsl-bint 2012.0
 - fsl-cluster 2004.0
 - fsl-cprob 2006.0
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 - fsl-cudabasisfield-cuda-9.2 2101.0
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 - fsl-cudabasisfield-cuda-10.2 2101.0
 - fsl-cudabasisfield-cuda-11.0 2101.0
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 - fsl-cudabasisfield-cuda-11.1 2101.0
 - fsl-cudabasisfield-cuda-11.3 2101.0
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 - fsl-cudimot 2006.0
 - fsl-data_atlases 2103.0
 - fsl-data_atlases_xtract 1.1.0
 - fsl-data_first_models_317_bin 2006.0
 - fsl-data_first_models_336_bin 2006.0
 - fsl-data_linearmni 1.0.0
 - fsl-data_possum 2106.0
 - fsl-data_standard 2006.0
 - fsl-deface 1.2.0
 - fsl-discreteopt 2008.0
 - fsl-eddy 2106.1
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 - fsl-eddy-cuda-9.2 2106.1
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 - fsl-eddy-cuda-10.2 2106.1
 - fsl-eddy-cuda-11.0 2106.1
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 - fsl-eddy-cuda-11.1 2106.1
 - fsl-eddy-cuda-11.3 2106.1
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 - fsl-eddy_qc v1.0.3
 - fsl-fabber_core v4.0.10
 - fsl-fabber_models_asl v2.0.7
 - fsl-fabber_models_cest v2.1.6
 - fsl-fabber_models_dce v2.1.5
 - fsl-fabber_models_dsc v2.0.5
 - fsl-fabber_models_dualecho v2.0.4
 - fsl-fabber_models_dwi v2.0.3
 - fsl-fabber_models_pet v1.0.1
 - fsl-fabber_models_qbold v1.0.2
 - fsl-fabber_models_t1 v2.0.2
 - fsl-fast4 2012.0
 - fsl-fastpdlib 2012.0
 - fsl-fdt 2103.0
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 - fsl-fdt-cuda-9.2 2103.0
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 - fsl-fdt-cuda-10.2 2103.0
 - fsl-fdt-cuda-11.0 2103.0
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 - fsl-fdt-cuda-11.1 2103.0
 - fsl-fdt-cuda-11.3 2103.0
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 - fsl-feat5 2104.0
 - fsl-film 2007.0
 - fsl-filmbabe 2012.0
 - fsl-first 2006.0
 - fsl-first_lib 2012.0
 - fsl-flameo 2012.0
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 - fsl-flirt 2108.0
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 - fsl-fnirt 2110.0
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 - fsl-fugue 2010.0
 - fsl-get_standard 0.1.0
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 - fsl-giftiio 2110.0
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 - fsl-gps 2012.0
 - fsl-lesions 1909.1
 - fsl-libgdc 2006.0
 - fsl-libmeshutils 2012.0
 - fsl-libvis 1909.0
 - fsl-mcflirt 2012.0
 - fsl-melodic 2012.0
 - fsl-meshclass 2102.0
 - fsl-misc_c 2106.0
 - fsl-misc_scripts 2004.0
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 - fsl-misc_tcl 2109.0
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 - fsl-miscmaths 2010.0
 - fsl-miscvis 2007.0
 - fsl-mist 2010.0
 - fsl-mm 1909.0
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 - fsl-mrs 1.1.8
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 - fsl-msm 2008.0
 - fsl-msmreglib 2008.0
 - fsl-mvdisc 2012.0
 - fsl-newimage 2104.1
 - fsl-newmesh 1904.0
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 - fsl-newnifti 3.0.7
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 - fsl-newran 2012.0
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 - fsl-oxford_asl v4.0.27
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 - fsl-possum 2111.0
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 - fsl-ptx2 2101.1
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 - fsl-ptx2-cuda-9.2 2101.1
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 - fsl-ptx2-cuda-10.2 2101.1
 - fsl-ptx2-cuda-11.0 2101.1
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 - fsl-ptx2-cuda-11.1 2101.1
 - fsl-ptx2-cuda-11.3 2101.1
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 - fsl-pyfeeds 0.9.9
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 - fsl-pyfeeds-tests 2110.1
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 - fsl-qboot 2010.0
 - fsl-randomise 2101.0
 - fsl-shapemodel 2012.0
 - fsl-siena 2006.0
 - fsl-slicetimer 2012.0
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 - fsl-sub 2.6.0
 - fsl-sub_plugin_sge 1.5.0
 - fsl-sub_plugin_slurm 1.4.0
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 - fsl-surface 2110.0
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 - fsl-susan 2012.0
 - fsl-swe v1.0.3
 - fsl-tbss 2012.0
 - fsl-tirl v2.2.1
 - fsl-topup 1911.0
 - fsl-utils 2007.0
 - fsl-vbm 2012.0
 - fsl-verbena v4.0.3
 - fsl-vtkio 2012.0
 - fsl-warpfns 2106.0
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 - fsl-xtract 1.5.1
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 - fsl-xtract_data 1.3.4
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 - fsl-znzlib 2110.0
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 - ghalton 0.6.1
 - hlsvdpropy 2.0.1
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 - libopenblas 0.3.18 *openmp*
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 - nidmresults 2.1.0
 - nidmresults-fsl 2.2.0
 - openslide-python v1.1.2
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# List of additional packages that
# are added to linux-64 installations.
linux-64-packages: []

# List of additional packages that
# are added to macos-64 installations.
macos-64-packages:
 # Newer libffi causes FSLeyes to segfault:
 # https://github.com/conda-forge/pyobjc-core-feedstock/issues/37
 - libffi 3.3