Commit 825b4f3c authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

RF: Separate out "base" packages that get installed before all others for

efficiency (e.g. so multiple different libopenblas variants aren't installed),
and to make installation process less ambiguous.
parent 99a62300
......@@ -34,23 +34,26 @@ channels:
# channels list for development releases.
internal_channel: http://${FSLCONDA_USERNAME}:${FSLCONDA_PASSWORD}@fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/internal/
# List of FSL conda packages and their
# dependencies which comprise the FSL
# release.
packages:
# Packages sourced from anaconda.org / conda-forge.
- fmrib-unpack 2.8.0
- fsleyes 1.3.0
# The FSL installation is created in two stages.
# First of all, the base_packages are installed.
base_packages:
- fslpy 3.7.0
- fsl-base 2109.1
- fsl-sub 2.5.8
- fsl-sub_plugin_sge 1.4.7
- fsl-sub_plugin_slurm 1.3.8
- libopenblas 0.3.18 *openmp*
# Packages sourced from the FSL conda channels
# Then all of these packages are installed
# in the second stage.
packages:
- ciftilib 1.5.3
- fmrib-unpack 2.8.0
- fsleyes 1.3.0
- fsl-add_module 0.3.2
- fsl-armawrap 0.6.0
- fsl-asl_mfree v1.0.2
- fsl-avwutils 2101.0
- fsl-base 2109.1
- fsl-basil v4.0.4
- fsl-basisfield 1910.0
- fsl-baycest 2012.0
......@@ -154,9 +157,6 @@ packages:
- fsl-shapemodel 2012.0
- fsl-siena 2006.0
- fsl-slicetimer 2012.0
- fsl-sub 2.5.8
- fsl-sub_plugin_sge 1.4.7
- fsl-sub_plugin_slurm 1.3.8
- fsl-surface 2101.0
- fsl-susan 2012.0
- fsl-swe v1.0.3
......
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